Paenibacillus sp. URB8-2: PUR_46680
Help
Entry
PUR_46680 CDS
T10751
Symbol
ligA2
Name
(GenBank) DNA ligase 2
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
paub Paenibacillus sp. URB8-2
Pathway
paub03030
DNA replication
paub03410
Base excision repair
paub03420
Nucleotide excision repair
paub03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
paub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PUR_46680 (ligA2)
03410 Base excision repair
PUR_46680 (ligA2)
03420 Nucleotide excision repair
PUR_46680 (ligA2)
03430 Mismatch repair
PUR_46680 (ligA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
paub03032
]
PUR_46680 (ligA2)
03400 DNA repair and recombination proteins [BR:
paub03400
]
PUR_46680 (ligA2)
Enzymes [BR:
paub01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PUR_46680 (ligA2)
DNA replication proteins [BR:
paub03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PUR_46680 (ligA2)
DNA repair and recombination proteins [BR:
paub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PUR_46680 (ligA2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PUR_46680 (ligA2)
MMR (mismatch excision repair)
DNA ligase
PUR_46680 (ligA2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PUR_46680 (ligA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH_3
DZR_2
Motif
Other DBs
NCBI-ProteinID:
BCG61243
LinkDB
All DBs
Position
complement(5069783..5071807)
Genome browser
AA seq
674 aa
AA seq
DB search
MDAMHTMEELVAELNKYNYHYYTLDAPLVSDKEYDALYDKLASLEAESGFVLPDSPTQRV
GGELLKGFVPHRHLAPLWSLDKAQNIEQLRSWNARVLRLVNDYNSKNPEQPLPEPCYAVE
LKFDGLTLNLTYRDGRLVQASTRGNGTTGEGILAQVKTIKSVPLTIPFKEGVIEVQGEGI
MNLSVLADYNRAAAEPLKNARNGAAGALRNLNPKLTAERRLNAYFYNIGYSEGIDFHDHR
EMMQFLRDNRFKVNPYLTYFDNFDEVTEQLAEIEEGRSKLDYLIDGAVIKITDFRIREVL
GYTDKFPRWAVAYKFEAEETTTVLESVIWNVGRTGKVTPLARVEPVELAGVTVQNCTLNN
VGDIERKNLKHALGTRVFIRRSNDVIPEILGKVTEENDGGEIIYPEHCPACGYPLEMRGA
HLFCNNKLNCKPQIVARITHYSSRDAMDIETFSDKTAGQLYEELNVREPADLYELTLEQL
VKLERFGEKKASNLLQALEESKGRDLASFLYALGIPNTGKATTKMLADHFRDLNAVMTAS
AEELSALPDIGGIVAESIVSFFADPFVVTGIRRLLDLGVQAKAPEAPAPVVSDSFFSGKT
VVLTGTLHKLTRDEAAEKLETLGAKVTGSVSKKTDLVIAGEKAGSKLAKAQTLGIPVIED
EEELLRLLEGGTPS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggacgcaatgcatacgatggaagagcttgtggcggagctgaataaatataactaccac
tactatacgctggatgcgccgctcgtcagcgacaaggagtacgacgccctgtacgacaag
ctcgcctcccttgaggccgagagcggctttgtgctgcccgattcgcctacccagcgcgtc
ggcggcgagctgctgaagggctttgtgccgcatcggcatcttgctccgctctggagtctc
gacaaggcgcagaacattgaacagctccgcagctggaacgcccgggttcttcggctggtg
aacgactataacagcaagaatcccgaacagcctcttccggagccctgctatgccgtggag
ctgaaattcgacggtctgacgctgaacctgacctatcgtgacggtaggctggttcaggct
tccacacggggcaacggcaccacgggtgaaggcattttagcgcaggtgaagacgatcaaa
tccgttccgctgacgattcccttcaaggaaggcgtcattgaggtgcagggtgagggcatt
atgaatttgtcggtgctcgccgactataaccgggcggcggcggagccgctgaagaatgcg
cgcaacggcgcggccggggcgctgcgcaacctgaatccgaagctgacggcggagcgtagg
ctgaatgcctatttctataatattggctactcggaaggcatagatttccatgatcatcgg
gaaatgatgcagtttttacgcgataaccggttcaaggttaatccttatttgacctatttt
gacaacttcgacgaagtgacggagcagttggctgaaattgaagagggccgctccaagctg
gactacctgatcgacggcgcggtcattaaaattaccgatttccgtattcgcgaagtgctg
ggttatacggacaagttcccccgctgggcggtcgcctacaaatttgaggcggaggagacg
accaccgtgctggaatcggtaatctggaatgtgggccggaccggcaaagtgacgccgctg
gcgcgggttgaaccggtagagctggccggcgttaccgtacagaattgcacgcttaacaat
gtcggcgacattgagcggaagaacctgaaacatgcgctagggacccgcgtcttcatccgc
cgatccaatgatgtcataccggaaattctggggaaggtgaccgaagagaatgacggcggg
gagatcatctatcccgagcattgcccggcctgcggttatccgctggaaatgcggggagcg
catctgttctgcaacaacaagctgaactgcaagccgcagatcgttgcaagaattacccat
tattcctcaagggacgcgatggacatcgagaccttcagcgacaagacggcgggacagctg
tacgaggagctgaacgtacgcgagcccgcagatctctatgagctgacgctggagcagctc
gtgaagctggaacgtttcggcgagaagaaggcaagcaatcttcttcaggcgctcgaagag
agcaagggacgggatctcgcttccttcctgtacgcgctgggcatcccgaataccggcaag
gctacgaccaagatgctggccgatcatttccgcgatctgaatgccgtcatgacggcgagc
gcggaggaactgtcggcgctgcccgatatcggcggcattgtggccgagagcatcgtttcc
ttttttgccgatccgttcgtggtcacaggcatccgccgcctgcttgatttgggcgttcag
gccaaggcgccggaagcgccggctccggttgtgagcgattccttcttcagcggcaaaacg
gtagtcctgaccggaacgctccacaagttgacccgggacgaagcggccgagaagctggaa
acgcttggcgccaaagtgaccggcagcgtatcgaagaagaccgacctcgtcattgccgga
gagaaggcgggcagcaagctggccaaagcgcaaacgcttggcatcccggtcatcgaggat
gaggaagaattgctccggctgctggagggcggaacgccgtcctaa
DBGET
integrated database retrieval system
