Pseudonocardia autotrophica: Pdca_53640 Help Entry Pdca_53640        CDS       T06156                                  Name (GenBank) hypothetical protein   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism paut  Pseudonocardia autotrophica Pathway paut03030   DNA replication paut03410   Base excision repair paut03420   Nucleotide excision repair paut03430   Mismatch repair Brite KEGG Orthology (KO) [BR:paut00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Pdca_53640    03410 Base excision repair     Pdca_53640    03420 Nucleotide excision repair     Pdca_53640    03430 Mismatch repair     Pdca_53640  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:paut03032]     Pdca_53640    03400 DNA repair and recombination proteins [BR:paut03400]     Pdca_53640 Enzymes [BR:paut01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Pdca_53640 DNA replication proteins [BR:paut03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Pdca_53640 DNA repair and recombination proteins [BR:paut03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Pdca_53640    NER (nucleotide excision repair)     GGR (global genome repair) factors      Pdca_53640    MMR (mismatch excision repair)     DNA ligase      Pdca_53640   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Pdca_53640 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH_5 SnoaL_2 Auto_anti-p27 BRCT_2 Motif Other DBs NCBI-ProteinID:  BBG04155 LinkDB All DBs Position complement(5666028..5668376) Genome browser AA seq 782 aa AA seqDB search MSSQSDGQARDRHARLAAEVADHQFRYYVLDSPVVSDGQFDELWHELLALEEAHPELRTP DSPSQRVGGTFSTEFVAHDHLERMLSLDNAFSAEDLRTWQERVTKEVGENLHYLCELKID GLAVNLLYEGGKLTRALTRGDGRTGEDITLNMRTLAEVPVTLTGTTEFPVPDLVEVRGEV YFRLEDFDRLNASLVEAGKEPFANPRNTAAGSLRQKDPRVTASRNLRLICHGLGRRAGFT PRTQSEAYDALVAWGLPISPRAKVLRGIEAVIEFVEHWGEHRHDVEHEIDGVVVKVDEVA LQRRLGATSRFPRWAIAYKYPPEQATTRLLDIRVNVGRTGRVTPFAVMEPVKVAGSTVEM ATLHNADEVRRKGVLIGDRVVIRKAGDVIPEVLGPVTDVRDGSERAFVMPTHCPECGTAL VQQKAGDVDRRCPNARSCPAQLRERLFHVAGRGAFDIEGLGYEAAVALLTSGVLTDEGDV FALTEADLLRTELFRNQKGELTVNGRKLLANLEAAQDRPLWRVLVGLSIRHVGPTAAQAL AREFGSMEALERAAAQAKTDTEAAGVAIVSDGTAGEDDTAARDTEPEAAAPESQGADPAD SATTAAAGDTEAAEAAGDTEAAVAEAEKQERAAVRARAKAVAEALAPIAGVDGVGPTIAA AVRDWFSVDWHREVVQKWRAAGVRMEDEVDESVPRFLEGLSIVITGSMERWSRDEAKESI MARGGRAAGSVSKKTAFVVAGEAPGSKYEKAIELGVPVLDEAGFQVLLDRGPDAAREHAS AE NT seq 2349 nt NT seq  +upstreamnt  +downstreamnt gtgagttcccagagcgacgggcaggcccgcgaccggcatgcgcggctggcggccgaggtg gccgaccaccagttccgctactacgtgctggattcgccggtcgtctccgacggccagttc gacgagctctggcacgagctgctcgcgctggaggaggcgcacccggagctgcgcacgccc gactcgccgtcccagcgggtcggcggcaccttctccaccgagttcgtcgcgcacgaccat ctcgagcggatgctctcgctcgacaacgccttctccgcggaggatctgcgcacctggcag gagcgggtcaccaaggaggtcggcgagaacctgcactacctctgcgagctcaagatcgac ggtctcgcggtgaacctgctctacgagggcgggaagctgacccgcgcgctcacccggggc gacgggcgcaccggcgaggacatcaccctcaacatgcgcaccctcgccgaggtgccggtc acgctgaccggcaccaccgagttcccggtaccggacctggtggaggtccgcggcgaggtg tacttccggctggaggacttcgaccggctcaacgcctcgttggtggaggcgggcaaggag ccgttcgcgaacccgcgcaacaccgcggccgggtcgctgcgccagaaggatccgcgggtc accgcgtcgcgcaacctgcggctgatctgccacggcctcggcaggcgtgcgggcttcacc ccgcgcacccagtccgaggcctacgacgcactggtcgcctgggggctgccgatctccccg cgcgcgaaggtgctccgcggcatcgaggcggtgatcgagttcgtcgagcactggggcgag caccggcacgacgtcgagcacgagatcgacggcgtcgtcgtcaaggtcgacgaggtcgcg ctgcagcgcaggctcggtgccacctcccggttcccgcgctgggcgatcgcctacaagtac ccgcccgagcaggccaccacccgactgctggacatccgggtcaacgtcgggcgcaccggg cgggtcaccccgttcgcggtgatggagccggtgaaggtggccggctccacggtcgagatg gcgaccctgcacaacgccgacgaggtccgccgcaagggtgtgctgatcggcgaccgggtg gtcatccgcaaggcgggcgacgtgatccccgaggtgctcggcccggtcaccgacgtgcgc gacggctccgagcgcgcgttcgtgatgccgacccactgtcccgagtgcggcaccgcgctc gtgcagcagaaggcaggcgacgtcgaccggcgctgcccgaacgcgcgctcctgcccggcc cagctgcgcgagcggctgttccacgtcgcggggcgcggcgccttcgacatcgaggggctc ggttacgaggccgcggtggcgctgctgacctccggcgtgctgaccgacgagggcgacgtg ttcgcgctcaccgaggccgatctgctgcgcacggagctgttccgcaaccagaagggcgag ctcacggtcaacggccgcaagctgctcgccaacctggaggcggcgcaggaccggccgctg tggcgggtgctcgtcgggctgtcgatccggcacgtcggcccgaccgcggcgcaggcgctg gcccgcgagttcggctcgatggaggccctcgaacgcgccgcggcgcaggcgaagaccgac accgaggcggccggggtcgcgatcgtctccgacgggacggcgggggaggacgacaccgcc gcccgcgacaccgagccggaagccgccgccccggaaagtcagggcgcggaccccgccgac tccgcgaccacggctgccgcgggcgacaccgaggcagcggaggcagcgggcgacaccgag gccgccgtcgccgaggccgagaagcaggagcgggcggcggtgcgggcccgggcgaaggcg gtggccgaggcgctcgccccgatcgccggggtggacggggtcggccccaccatcgccgcc gcggtgcgcgattggttctccgtcgactggcatcgcgaggtcgtgcagaagtggcgcgcc gccggggtccggatggaggacgaggtcgacgagtcggtcccgcggttcctggagggcctg tcgatcgtgatcaccggctcgatggagcgctggtcccgggacgaggcgaaggagtcgatc atggcccggggtggccgggccgccgggtcggtgtcgaagaagaccgcgttcgtcgtcgcc ggcgaggcgcccgggtccaagtacgagaaggccatcgagctcggtgtgccggtgctcgac gaggccgggttccaggtgctgctcgatcgcggcccggatgcggcccgggagcacgcctcg gccgagtga

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