KEGG   Prunus avium (sweet cherry): 110747945
Entry
110747945         CDS       T05161                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1 isoform X1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
pavi  Prunus avium (sweet cherry)
Pathway
pavi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pavi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110747945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pavi03021]
    110747945
Enzymes [BR:pavi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110747945
Transcription machinery [BR:pavi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     110747945
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5 RNA_pol_Rpb1_4 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 110747945
NCBI-ProteinID: XP_021803693
UniProt: A0A6P5RFN4
LinkDB
Position
Unknown
AA seq 1479 aa
MDNELYEEEGVPSGLITGIHLNVSTQEDIENISVKQIDAVTEVTDPKLGLPNPSFQCSTC
GAEKLKCCEGHFGDIKFPCTILHPYYLSEVAQILNKICPGCKSIRQNLRAKGAGSVVGHR
KLKGCKYCIGSSINYPRMKFKVSTRELFKRSAIIAEANGILPADYWDFIPKDAQQDESCM
KPNKRVLSHAQVHYLLKDVDPKFIEKIVPKTNSLSMGSFLVTPNCHRVTEVMHSFSNGQR
LMFDERTRAYRKLVDFKGVANELGSRVLDCLKISKLNSEKPSKDFISAQQKNIKDDPSKT
SGLRWIKDVVLGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAERLQISENLNRWNIEKLDA
SCNLRLMVKGEMHVRRKGSLVWVRRTDELQMGDTIYRPLSDGDIVLINRPPSIHQHSLIA
LSVKILPITSVVSINPLCCSPFRGDFDGDCLHGYIPQSNDARVELRELVALDKQLINGQS
GRNLLSLSQDSLTAAHLIMEDGTLLNLLEMQQLEMFCWDVLPSPAVIKAPSLNSHAWTGK
QVFSMLLPSDFDYDFASDGVYIKNGELLSSEGSSWLRDTGGNLFQSLVNHFQGQVLDFLF
AAQEVLCEWLSMRGLSVSLADLYLASDSGSRNNLMEEILCGLQEAEQACIFKQLLVDNCQ
EFLMGCAEENRSPLTFDAEYFCHEKQKSAALSQVVHDAFKHIFRDIQSLAHKYAGKDNSL
LTMLKAGSKGNLQKLVQHSMCLGLQHSLIPLSFRIPNQLSCAAWNNQKACSLIQKVEGTY
ECVESYIPSAVVKSSFLTGLNPLECFVHSVTSRDSSFSGNADLPGTLTRKLMFLMRDLYT
AYDGTVRNAYGNQLVQFSYDIDMDKSDSTSTSYAKSTTACDGIGGQPVGSLSACALSEAA
YSALDQPVSLLETSPLLNLKNILECGSKKSSAKQTMSLFLSEKLGRRRHGFEYGALEVKN
HLEGLTFSDIVSTVMIIFSSQSNSQKRFSPWVTHFHICKEIVRKRRLKVHSVVDSLYARC
NSARPELKVVLRSLLITSKGCSAAQTCNGDDDTFCITVTMPENSKNSSEQLDIARDLVIP
FLLGTVVKGFLEVKKVDILWNDHPRVSKKIHGSSGELYLRVSMSGKTGRRRLWSMLMDNC
LQIMDLIDWSRSHPDNVHDYCIAYGIDAGWKYFLNNLETAANDIGKDILPQHLILVADCL
SATGEFVGLNAKGIAQQKGHASVSSPFVQACFSSPGACFIKAAKGGVVDELHGSLEALAW
GNTPPSGTGRQFDILYSKEGLNLSKPLNPYDLLGSQISSSSENAFETSKAWNNTLDKCDV
TSIGLEKSESVFKSVIRKYLTINDIQKWSQTLKRILRKYDINESLTEGDKSILKMALHFH
PHKVDKMGSGVQDIKVGQHPKHENARCFMLVRIDRTEEDFSYHKCVLGALEIVAPERAKS
YRSKWMNHLPEMLCSVIQNYIRGPKSDFPLPLISLVLNK
NT seq 4440 nt   +upstreamnt  +downstreamnt
atggacaatgaattgtatgaagaagaaggagtgccatctggtctcataactggcatacat
ctaaatgtttcaactcaggaagatatagagaatatatctgttaaacaaattgatgcagtc
accgaggtcactgatcctaagttgggacttccgaatccatcttttcagtgctctacttgt
ggtgctgaaaaattaaaatgctgtgaaggtcattttggggatatcaagtttccatgcaca
attctccatccctattatctttcagaagttgcccaaattttaaacaagatttgcccagga
tgtaaatctatcaggcaaaatctaagggccaagggtgctggttctgtagttggtcatagg
aagctcaagggttgcaaatattgtattggaagttcgataaactatccaagaatgaaattc
aaagtttctacgagggaactctttaaaagaagtgcaataattgcggaagcaaatggaata
ttacctgctgactattgggactttattccaaaagatgcacagcaagatgaaagttgcatg
aaaccaaacaaaagagttctatctcacgctcaggttcattatttgttgaaggatgttgat
ccaaaattcattgaaaagattgtaccaaagacaaactcactttctatgggttctttcctt
gtaactccaaattgtcatcgtgtgacagaagttatgcattctttttctaatgggcagcgg
ttgatgtttgatgaacggaccagggcttatagaaagcttgttgatttcaaaggtgtagct
aatgagttgggttctcgtgttttggactgcctgaaaatttccaagctaaactcagaaaaa
ccaagcaaagattttatttctgctcagcaaaaaaatattaaagacgatccttcaaaaacg
tctggcttgagatggatcaaagatgttgttctagggaagcgaagtgaccactgtttccgc
acagttgttgttggtgatccaaacatcaagctcagtgaaattggcataccatgtcaaatt
gcagagaggctgcagatttctgagaatctgaacagatggaatatcgaaaagttggatgcc
tcctgcaatctacgccttatggtgaaaggcgagatgcatgtgcgtagaaaaggtagtctg
gtttgggtacgccgaacagatgaattgcagatgggagatactatttaccggcctttgagt
gatggagatatcgtgctgataaataggcctccatcaatacatcaacactccctaatagct
ttatccgtcaagatccttccaataacctctgttgtatcaataaacccactctgttgctct
ccttttcgtggtgattttgatggtgattgccttcatggttatattcctcaatcaaatgat
gccagagttgagcttcgagagcttgttgctttagataagcaattgattaatgggcagagt
ggtaggaacctgctctcacttagtcaggatagcttaactgcggcccatttgatcatggag
gatggcactctcttgaatctacttgaaatgcaacagttggaaatgttctgctgggatgta
ctgccatcaccagcagttattaaagcaccctcacttaatagccatgcttggactggaaag
caagtattcagcatgctcctaccttcagattttgattacgattttgcttcagatggtgtt
tatattaaaaatggggagctgttatcttctgaaggttcttcttggttgcgagacacaggt
ggcaatctatttcagagccttgttaatcatttccagggtcaggtacttgacttcttgttt
gctgctcaggaagttctttgtgagtggttgtcgatgaggggcttgagtgtctctctcgcg
gacctgtaccttgcttctgactcaggttcaaggaataatttgatggaggaaatcttatgt
gggttgcaagaagcggagcaggcgtgtatatttaaacagttgttggtggataattgtcag
gaatttctcatgggatgtgcagaagagaatcgaagtcctctgacttttgatgcagaatac
ttttgtcatgagaagcagaaatctgctgcccttagtcaggttgttcatgatgctttcaaa
cacatttttcgggatattcaaagtttagcacacaaatatgctggtaaggacaactctttg
ctgactatgcttaaggctggaagcaagggtaatttgcagaaattagttcagcacagtatg
tgccttggtttgcaacactcactgattccattatcattcagaattccgaaccagctctca
tgtgctgcatggaataatcaaaaggcatgcagtttaattcagaaggttgagggaacttat
gaatgtgttgagtcctacatcccatctgccgtggttaaaagctctttcttgacaggctta
aatccgttagaatgttttgttcattccgttacaagtcgagatagttcttttagtggtaat
gctgatcttccagggactttgactcgaaagctaatgtttttaatgcgggatttgtacact
gcttatgatggaacggtgagaaatgcatatgggaaccagcttgttcagttctcctatgat
attgatatggacaaatcagatagcaccagtacctcatatgccaagagtactactgcttgt
gatggtataggtggccaacctgtcggctcattgtctgcttgtgccctgtctgaagctgca
tacagtgctttagatcaaccagttagtcttcttgaaacttctccattgctaaatctgaag
aacatcttggaatgtggttcaaagaaaagtagtgctaagcaaactatgtctctattttta
tctgagaagcttggaagacggaggcatggttttgagtatggagccttagaagttaagaat
catttggagggactgacattttccgacattgtttctactgtcatgataatcttctcctca
caaagtaatagccaaaagcgtttcagcccatgggttacccactttcatatatgcaaggaa
attgtgaggaaaaggaggctgaaggtgcattccgttgttgattccctttatgcaaggtgc
aattcagccagacctgaattaaaagttgttcttcgcagtttgctgattacaagcaagggt
tgttctgcagctcagacatgtaatggagatgacgatacattttgcatcactgtcactatg
ccagaaaactccaaaaattcttctgaacagctggatatagctcgagacttggtgatacct
ttccttcttggaacagttgttaaaggattcctggaggtgaaaaaggtggatattttatgg
aatgatcaccccagggtatcaaaaaagattcatggttcttctggtgaactctacttaagg
gtttctatgtcgggaaagactggcaggagaaggctttggagtatgcttatggataactgt
ctccagattatggatttgattgattggtcacgaagtcatccagataatgtccatgattat
tgcatagcgtatggaatagatgctgggtggaaatattttctcaataatttagagaccgca
gccaatgacattggaaaggacatacttcctcaacatttgattcttgtagctgattgtttg
tcagcaaccggcgagtttgttgggttaaatgccaaaggcattgcccaacagaaaggacac
gcatctgtatcctcgccattcgtgcaagcgtgtttttcaagtcctggtgcttgctttata
aaagctgccaagggtggagttgtggatgaacttcatgggagtttggaagcattggcatgg
ggaaatactcctccttcagggactggcagacagttcgacatattatattctaaggagggg
ctcaatctatcaaagccattgaatccttacgacctactgggcagccaaattagttccagt
agcgagaatgcatttgaaacgtctaaagcttggaacaatacactagacaaatgtgatgta
acatctattgggcttgagaagtcagagagcgtcttcaaatcagtcataagaaagtatttg
actatcaacgatattcagaagtggtctcagacattgaagcgtattttgcgcaagtatgac
atcaatgaaagtttaactgaaggggacaagtcaatcttgaagatggcattacattttcat
cctcacaaagttgataagatgggaagtggagttcaagacataaaggttgggcaacacccg
aagcatgagaatgcacgttgctttatgttggtacgaatagacaggacagaagaagatttt
tcgtaccacaagtgtgtactgggtgctctcgagattgtagctcctgaaagggcgaaaagc
taccggtcaaaatggatgaaccatttacctgagatgctgtgctctgtgatccaaaactac
atccgaggtcccaagtctgatttcccccttcccctaatatcgcttgtattaaataaataa

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