Prunus avium (sweet cherry): 110759677
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Entry
110759677 CDS
T05161
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
pavi
Prunus avium (sweet cherry)
Pathway
pavi04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
pavi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
110759677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pavi03019
]
110759677
Messenger RNA biogenesis [BR:
pavi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110759677
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
110759677
NCBI-ProteinID:
XP_021817462
UniProt:
A0A6P5STA7
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MGVPAFYRWLADRYPLSIADVVEEQPREGPNGVPLPIDVSRPNPNGYEFDNMYLDMNGII
HPCFHPDGKPAPATYHDVFSSIFDYIDHLFSLVRPRKLLFMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEVEEERLKKEFEMEGMYLIPKEKPETSDSNVITPGTQFMAVLSVALQYFIQ
SRLNHNPDWRSTKVILSDSNVPGEGEHKIMSYIRSQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVITLPGQQEKCFLCGQVGHLAAECRGKFDDYGNVVDETPIHKKKYQ
FLNIWVLREYLQYELEIPNPPFQINFERIVDDFVFMCFFVGNDFLPHMPTLEIREGAINL
LMHIYRREFTAMGGYLTDAGEVLLDRVEHFIQSVAVFERQIFQKRVRIQQAIENNEEMRN
RSRRESSAELPAPVVDKVKLGEPGYTERYYAEKFQVTKPEEIDKVKKDLVLKYVEGLCWV
CRYYYQGVCSWQWYYPYHYAPFASDLKDLDELEITFFLGEPFKPFDQLMGTLPAASSSAL
PEKYRNLMTDQSSPIYDFYPSDFEVDMNGKRFAWQGVAKLPFIDEKKLLAQTRRLESTLT
EEEQARNSVMLDLLYVYPSHPLAAQINLYYQHYYQSPPHERFAWAINPIASGGMNGYLWL
SERNGVRYVIPSPVRGYPNIDYNQVLNVTYLNPVAHKHIPEPPQGVVMPKKVVKPMDIKP
APALWHEDNGRRQQGRERPQVPGAIAGPMLGEAAHRLVKNTLNIRSNNSASGFWDQQPLR
NFPGNYPVNRPRPAGPSGYERGFREEAKYGNSFTPQGIMARPRFPSSNGMQGDRQSFRAQ
ERVQYQEQSFRTQERVQYQEQYHSLRTGMSSLTMEESVRTRSPAGQPGMPNSGYSTNPQH
QFAQGALPSPPPKWINKESTANGGLYNRQQETGFGGAYEQQPVKKVYQVKTRAPQDMSDA
GDQTGSDSSGFV
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgggcgttcctgcgttttaccgctggctagcggatcggtacccactgtccatcgccgac
gtggtggaggaacagcctagggagggccccaatggcgtgcctctaccgatcgacgtttcc
agaccaaaccctaatggctatgagttcgacaacatgtacctcgacatgaacggcattata
catccctgttttcatcccgatggcaagccagcccctgctacctatcatgatgtattcagt
tcaatatttgattacattgaccatctcttctcattggttcgcccaagaaagcttcttttt
atggcaatcgacggggttgctccaagagctaaaatgaatcagcaacgttctcgacgtttc
agagctgcaaaagatgcggctgaggcggaagtcgaagaggaaagactgaagaaagaattt
gagatggaggggatgtatttgattcctaaagagaaacctgaaacatcagattcaaatgtt
attactccgggcactcaatttatggcagtgctttcggtggcacttcaatatttcatacaa
agtaggttaaaccacaaccctgattggcgatctacaaaggttattctgtctgattcaaat
gttcccggcgagggagagcacaaaataatgtcatacatccgatcgcagcgcaaccttcct
ggttttgatccgaacactcggcattgtctctatggtttggatgcagatctaattatgctg
gctttagctacacatgaggttcacttctcaatattaagagaggtgattactcttccaggt
caacaagaaaaatgttttctttgtgggcaagttggtcatctggcagctgagtgtcgtggt
aaatttgatgattatggaaatgtagtagatgaaaccccaattcacaagaagaaatatcag
ttcctcaacatatgggtattgcgcgaatacttgcaatatgagctggagattcctaaccct
ccttttcagattaactttgaaaggatagtggatgattttgtgtttatgtgtttttttgtt
ggcaatgattttcttccacatatgccgacattggagataagggagggcgctattaattta
ttgatgcatatttatagaagggagtttactgctatgggtggttatcttactgatgcgggt
gaggtattgttagacagagtagaacattttattcaatctgttgctgtttttgaacgccaa
atctttcaaaagcgggttcgaattcagcaggctatagagaataatgaagagatgagaaat
agatctagaagagaatcttctgcagagctaccggctccagtggttgacaaggttaaattg
ggggagcctggatatacagagaggtactatgctgagaaatttcaagtaacaaagcccgag
gagattgataaagttaaaaaggacttagttttaaaatatgtagaaggcttatgttgggtc
tgccgatattactaccaaggggtctgctcatggcaatggtactacccatatcattatgcc
ccttttgcttctgatctaaaagatttagatgaattagaaataacgtttttcttgggagag
ccatttaaaccctttgatcagctcatgggaaccttaccggctgcaagctctagtgctctt
ccggaaaaatacagaaatttgatgactgatcaatcatcaccaatctatgatttctatcct
tctgattttgaggttgacatgaatggcaagcgctttgcatggcagggtgttgccaaattg
ccattcattgatgagaagaaattgcttgcccagacaaggaggcttgaaagcactttaacg
gaggaagagcaggctcggaatagtgtgatgcttgatttgctttatgtctatccttctcat
cctttggcggctcaaattaatttgtactaccaacattattatcagtcaccccctcatgaa
agatttgcatgggcgataaacccaattgctagtggtggaatgaatggatacctttggtta
tccgagagaaatggtgttcgatacgtaatcccttcccctgttcgtggttatccgaacatt
gattataaccaagtcttaaatgttacctatcttaatcctgtagctcataaacacatccca
gaacctccccagggtgtggtcatgcccaaaaaggttgtaaaacctatggacatcaaacca
gcccctgcattatggcatgaagacaatggtcgacgccagcaaggcagagagaggccacaa
gtacctggagcaattgctggacctatgttgggagaagcagctcatcgacttgtcaagaac
acacttaatattagatctaataattcagcttcgggattttgggaccaacaaccgctacgt
aattttccaggaaactatccagtcaatagaccaagaccagctgggccctctgggtatgaa
aggggcttccgtgaagaagcaaagtatggaaactccttcactcctcagggcatcatggct
aggcctagatttccctcctcaaatggtatgcagggtgacagacagagttttagagctcaa
gaaagagtccaatatcaagaacagagttttaggacacaagaaagagtacaatatcaagaa
cagtaccatagcttgagaactgggatgtctagtttaacaatggaagaaagtgtgagaacc
agatctcctgctgggcaaccagggatgccaaattcagggtactccacaaacccacaacac
cagtttgcgcagggtgctcttccttcgccgcctcccaagtggattaacaaagaatcaact
gcaaacggtgggttatataataggcaacaggaaactggatttggcggagcatatgagcag
cagccagtcaagaaggtgtatcaggttaagactcgtgctccccaggatatgtcggatgct
ggagaccagactgggagtgattcatctggatttgtgtga
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