Pseudomonas avellanae: BKM03_10840 Help Entry BKM03_10840       CDS       T05369                                  Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pavl  Pseudomonas avellanae Pathway pavl03030   DNA replication pavl03410   Base excision repair pavl03420   Nucleotide excision repair pavl03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pavl00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     BKM03_10840    03410 Base excision repair     BKM03_10840    03420 Nucleotide excision repair     BKM03_10840    03430 Mismatch repair     BKM03_10840  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pavl03032]     BKM03_10840    03400 DNA repair and recombination proteins [BR:pavl03400]     BKM03_10840 Enzymes [BR:pavl01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      BKM03_10840 DNA replication proteins [BR:pavl03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      BKM03_10840 DNA repair and recombination proteins [BR:pavl03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      BKM03_10840    NER (nucleotide excision repair)     GGR (global genome repair) factors      BKM03_10840    MMR (mismatch excision repair)     DNA ligase      BKM03_10840   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       BKM03_10840 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD PTCB-BRCT DUF4796_N Bep_C_terminal Motif Other DBs NCBI-ProteinID:  AVB19684 UniProt:  A0AAD0GPP2 LinkDB All DBs Position 2181734..2184097 Genome browser AA seq 787 aa AA seqDB search MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQ RVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGSKVQYSC EPKLDGLAVSLLYRDGALVRGATRGDGATGEDISVNVRTVRNIPLKLQGKGWPELLEVRG EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSA EIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFKVNN LAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVVERRPETAKPVEVPQSCPVCGS HVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGDKTIEQ LVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVG EETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECG LQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLDAVIGADWLDMRQA LPEKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKAVEGLPLAGQTWVLTGSLE RMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEDALLKRLT ELGVAVD NT seq 2364 nt NT seq  +upstreamnt  +downstreamnt atgaaggccgccgaaacccgaatcctggaactgcgtgcagagctggatcagcacaactac cgctatcacgttctggacgagccgagcatcccggatgccgagtacgaccgcctgttccac gaactcaaggcccttgaggcagaaaacccgcatctggtcacgcccgattcgccgacccag cgggtgggcagtgccgcattgtcggctttcacccaggtgcgtcacgaaatggccatgctc agcctgggcaacgcttttgaagaaaacgacctgcgcgagttcgaccgccgtgtaaccgaa gggctggacctgcctgccggggatctgtttggcgaaggcagcaaggtgcaatacagctgc gagcccaagctggacggcctggcggtcagcctgctgtaccgcgacggtgcactggtgcgc ggagccacgcgcggcgacggggccacgggcgaagacatcagcgtcaatgtgcgcaccgtg cgcaatatcccgctcaagctgcaaggcaagggctggccagagctactggaagtacgcggc gaagtgttcatgtccaaggccggtttcgagcggcttaacgccagccagctggaagtcggc ggcaagaccttcgccaacccgcgtaacgccgctgctggcagcctgcgccagctggattcg aagatcactgccaaccgtccgctggaattctgctgctatggcctggggcagacctcggca gaaattgccgacacgcacatcggcgtgcttgaaacgttgaaaaaatggggcatgccggtc agtcgcgaactgaaactggcggacggcgtcgaggagtgcctggcttactaccgcgacatt ggtgagcgacgtctttcgctgacctacgagatcgacggtgtggtgttcaaggtcaacaat ctggcggcgcagcgcgaactgggctttcgtgcccgcgagccacgctgggcgattgcccac aagtttccggccatggaagagctgaccgaactgctggacgttgaatttcaggtcggccgt accggcgcagtcacgccggtcgcgcgcctcaagccggtcaaggttgccggtgtcatggtc gccaatgccacgctgcacaacatggatgaagtggcgcggctggggctgatgattggcgac acggtgattatccgtcgcgccggtgacgtgattccgcaggtggtgcaggtcgtcgtcgag cgccgccccgaaaccgccaaaccggtcgaagtcccgcaaagctgcccggtgtgcggctcg catgtcgagcgcacgcagttgatcaaacgcagcaagggcaaggaaaccgtcactgaaggc gcggtgtatcgctgcgtcgggcggctggcctgtggtgcgcaactcaagcaggcgatcatt cactatgtgtcgcgtcgggcaatggacatcgaaggcctgggtgacaagaccatcgagcaa ctggtcgatgaaaagctcattggttcgcctgccgacctgtacaaactgaaatacgaacag atcatcgacctggaaggctttgctgaaatctccagcaacaaactgctcaaggcgattgcc gacagccgacagccgaccttggcgcgcttcatctatgccctgggtatccccgatgtaggc gaggagacggccaaggtactggcgcgctcactggcgtcgctggaccgcgtcaaacaggca ctgccggaagtgctgacgtacctgccggatgtcggtctggaagtcgcttacgaaattcac agcttctttgaggacgagcacaaccgcaacgtcatcgacgcgctgctaggcgaatgcggt ctgcaattgcaggaccagggcgagctgggcgcagagtttgctgccagcaccacgctggaa ggcctgatcgacaagctgcacatcccatcggtggggccgggcgctgcgcagaagctggct gaccggttcggcacgttggatgcggtcatcggcgctgactggctggacatgcgccaggcg ctgccggagaagcaggccaaatcggtccgcgacttcttcgacgacaacgccaacgccgag cgcgcgcgcgccatcgaagcccagctcaaggacttcggcatgcactggcgcagcgagaaa aaagccgtcgaaggcttgccgctggcaggccagacctgggtgctgacaggttcgctggaa cgcatgagccgcgacgtcgccaaggaaaaactcgaaagcctgggcgccaaggtgtccggc tcggtatcggccaagacccacaccgtggtcgccgggcccggtgcgggttccaaactgacc aaagccaacgagctgggcctgactgtgctggacgaagacgcactgctcaagcgcctgacc gaactgggcgtagcggttgattga

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