Paenibacillus sp. YPG26: LDO05_16300
Help
Entry
LDO05_16300 CDS
T11186
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
payg Paenibacillus sp. YPG26
Pathway
payg03030
DNA replication
payg03410
Base excision repair
payg03420
Nucleotide excision repair
payg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
payg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LDO05_16300 (ligA)
03410 Base excision repair
LDO05_16300 (ligA)
03420 Nucleotide excision repair
LDO05_16300 (ligA)
03430 Mismatch repair
LDO05_16300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
payg03032
]
LDO05_16300 (ligA)
03400 DNA repair and recombination proteins [BR:
payg03400
]
LDO05_16300 (ligA)
Enzymes [BR:
payg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LDO05_16300 (ligA)
DNA replication proteins [BR:
payg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LDO05_16300 (ligA)
DNA repair and recombination proteins [BR:
payg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LDO05_16300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LDO05_16300 (ligA)
MMR (mismatch excision repair)
DNA ligase
LDO05_16300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LDO05_16300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
DNA_ligase_ZBD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
USB32791
LinkDB
All DBs
Position
complement(3408219..3410231)
Genome browser
AA seq
670 aa
AA seq
DB search
MDPMHSMEQLVEELNKYNYHYYTLDNPLVSDKEYDVLYDKLVALEAETGVTLPDSPTQRV
GGELLKGFKPHRHLTPLWSLDKAQNEEHLQSWNNRVLKLVGDYNAKNPETPLPAPSYVVE
LKFDGLTLNLTYTDGRLVQASTRGNGAVGEGILAQVKTIKSVPLRIPYTGGTIEVQGEGI
MNLSVLAAHNESGADPLKNARNAAAGALRNLNPKVTAERKLSAFFYNVGYAEGISFDNHK
EMMTFLKDNFFKVNPFVSYFDSFDQVMHELHLIQERRSSLDYLIDGAVIKITDMRTREVL
GYTDKFPRWAVAFKFEAEETTTVLESVVWNVGRTGKITPLAKVEPVELAGVTVQNCTLNN
VGDIERKNLKFAIGTRVFIRRSNDVIPEILGKVTEESDGQEIVYPESCPACGFPLEQRGA
HLFCNNRFGCKPQIVARITHFASRDAMDIETFSDKTAEQLYDELEVREPADLYTLTYEDL
VKLERFGAKKATNLLEAIEQSKGRDLAAFLFALGIPNTGKSTTKVIAEHFGSLQAIMAAT
AEELTALPDIGGIVADSIVNFFADPFMQAGINKMLSLGVEAKAPEKPQLVATDSFFSGKT
VVLTGTLHQLTRDEAAEKLEALGAKVTGSVSKKTDLVIAGEKAGSKLTKAKELGIQVIED
EDELIKLLEG
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggatccaatgcattcaatggagcagcttgtggaggagctgaataagtataactatcac
tactacacgctggataatccactagtcagcgacaaggaatatgacgtcctctatgacaag
ctagtggcgcttgaggcggagaccggagtgacactgcccgattcccctacccagcgggtg
ggaggcgaattgctgaaaggcttcaaaccgcatcgtcacttaacccccctctggagtctg
gataaagctcagaatgaggagcatctgcagagctggaacaaccgtgtgcttaagctggta
ggggactataacgctaagaatccggagacgccgctgcccgcgccttcttatgtggttgaa
ctgaaatttgacggacttaccctgaatctgacctacacggatgggcggctggttcaggct
tctacgcgggggaatggagctgtcggggagggaattcttgcccaggtgaagacgatcaag
tccgtacctctccgaatcccctacacaggcggaacgattgaagttcaaggtgaaggcatt
atgaatctttctgtacttgcggcgcacaatgagtccggggctgatccgctgaaaaatgca
cggaatgccgcagccggagcactgcgtaaccttaatcccaaggtcacagctgagcgtaag
ctgagcgcgtttttttataacgtcggctacgcagagggaattagttttgacaatcataag
gaaatgatgactttcctcaaagataactttttcaaagtcaatccgttcgtatcttatttc
gatagcttcgatcaagttatgcatgagcttcatctgattcaggagcgccgcagctccctg
gattatcttattgatggggccgttatcaaaatcaccgatatgcgcacacgcgaagtgcta
ggttataccgacaaattcccgcgctgggcagtggccttcaaattcgaagcggaagagaca
accacagtcctggagtccgtagtctggaatgtaggccgtactggtaaaataacaccgtta
gcgaaggtagagcctgtcgagctggctggagttacggtgcagaactgtacgcttaacaat
gtcggggacattgagcgcaaaaatttgaagttcgcgatcggcacccgggtatttattcgc
cgttccaatgacgtaattcctgagattctgggtaaggtgacggaagagagcgatggacag
gagattgtctatccggagagctgtccagcctgcggctttccgctcgaacagcgcggcgcc
cacttgttctgcaataaccggtttggctgcaagccgcaaattgtcgcgcggattacgcac
ttcgcctcgcgggatgcaatggatattgagacctttagcgataagactgcggaacagctc
tatgatgaactggaggttcgcgagccagcggatctgtacacacttacctatgaggatctg
gtgaagctggagcgcttcggagctaagaaggcgaccaacctgcttgaggccatcgagcag
agtaaagggcgggatctcgctgcgtttctgttcgcgcttggtattcctaatacgggcaag
tcgacaactaaagtaattgctgagcattttggcagccttcaggccattatggcagcaact
gcagaggaactaactgctctgcctgacatcggaggcattgttgctgatagcattgtcaac
ttttttgcagatccattcatgcaagctggaattaacaaaatgctgtccttgggtgtagag
gccaaggctcctgagaagccacagctggtggcaacggattccttcttcagcgggaagacg
gtcgtgcttacaggaactctgcatcagctgactcgagacgaagctgccgagaagcttgaa
gcgctgggagcgaaggtcacaggcagtgtgtccaagaagacggatcttgtcatagccgga
gagaaggcaggcagcaagcttacgaaagcaaaagaactcgggattcaggtcattgaggat
gaagacgagctgattaagctgttagaaggataa
DBGET
integrated database retrieval system
