Paenarthrobacter sp. YJN-5: HMI59_14600
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Entry
HMI59_14600 CDS
T10115
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
payj Paenarthrobacter sp. YJN-5
Pathway
payj03030
DNA replication
payj03410
Base excision repair
payj03420
Nucleotide excision repair
payj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
payj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMI59_14600 (ligA)
03410 Base excision repair
HMI59_14600 (ligA)
03420 Nucleotide excision repair
HMI59_14600 (ligA)
03430 Mismatch repair
HMI59_14600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
payj03032
]
HMI59_14600 (ligA)
03400 DNA repair and recombination proteins [BR:
payj03400
]
HMI59_14600 (ligA)
Enzymes [BR:
payj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMI59_14600 (ligA)
DNA replication proteins [BR:
payj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMI59_14600 (ligA)
DNA repair and recombination proteins [BR:
payj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMI59_14600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMI59_14600 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMI59_14600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMI59_14600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QOT17717
LinkDB
All DBs
Position
complement(3086250..3088547)
Genome browser
AA seq
765 aa
AA seq
DB search
MSTPENPDRVSTTSTAAVAVEEGAPPSENLREEYQELVDLVRKYRYAYYQEDAPTVSDAE
YDLLYRRLEELEALHPELVANDSPTQEVGGEVSAAFAAVEHLQRMYSLDDVFSLDELEAW
VRKVEASVAKLGDRVPPISWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITHNVL
TIKEIPRQLSGSGYPSEVEIRGEVFIPSKAFAEFNESLVAAGKAPLANPRNAAAGSLRQK
DPAETAKRPLSMFVHGIGAREGLEAAGQSETYKLLGEWGLPVSPYSKVLDSYDGVLEFIA
HYGEHRHDLLHEIDGIVVKIDDFATQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIMVNV
GRTGRVTPFGLMEPVKVSGSTVGMATLHNQDVVKAKGVMIGDIVILRKAGDVIPEIVGPV
LALRDKQDPPVREFVMPTECPSCGTPLAPSKEGDVDIRCPNGKSCPSQLRERVFHVASRG
AFDIEALGWEAAIALTQPAVPEIPPLTSEAALFDLTREDLANVMIRREKKSKGVGTGQYE
LVPYFYTKATAKTPSKPTATTEKLFAELEKAKKQPLWRVLVALSIRHVGPTASRALATNF
GSMDAIRNATEEQLAHVDGVGPTIAAALKEWFAVDWHNEIVDRWAAAGVRMEDDRDTATP
RTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKAAGSVSKNTSYLVAGESAGTKLDKAEQL
GIPVLDEDGFRELLANGPAAPEGQPATSEDRENGDEAAAREGESE
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaccagagaatccagatcgggtcagcaccacatccacggccgccgtcgccgta
gaggagggtgcgccgccgtcggaaaacctccgggaagagtaccaggaactggttgacctg
gtccggaagtaccggtatgcgtattaccaggaagacgctcccactgtttccgacgctgag
tatgacctcctgtatcggcgcctggaggaattggaagccctccatccggagctcgtcgcg
aatgattcacccacccaggaagtgggcggcgaggtctccgcggcttttgccgccgtcgag
cacctccaacggatgtacagcctcgatgacgtgttctcgctcgacgagctggaggcctgg
gtgcggaaggtcgaggcgtcggtggccaagctcggggacagggtcccgccgatctcgtgg
ttgaccgagttgaagatcgatggcctggccgtgaacctgctgtaccgggacggcaagctg
gtgcgtgctgctacccgcggcgacggcaccacgggtgaggacatcacccacaacgtcctg
accatcaaggaaatcccgcggcagctcagcggctcggggtatccgtccgaagttgagatc
cgcggcgaggtcttcatcccgtccaaggctttcgcggagttcaatgagtcgttggtggca
gcgggcaaggcgccgctggccaacccccgcaacgccgccgcgggttcgctccggcaaaaa
gatccagcggagacagccaagcgtcccctcagcatgttcgtccacggcatcggggcccgg
gaagggctggaagcggccggccagtcggagacctacaagctcctgggcgaatggggactc
ccggtcagtccctactcgaaggtcctggactcttacgacggcgtcctggaattcattgcc
cactacggcgaacaccgccacgacctcctgcacgagatcgacggcatcgtggtgaagatc
gatgacttcgccacccaacgcgcactcggctacacctcccgcgtgccgaggtgggccgcc
gcgtacaagtacccgccggaagaggtccacaccaaactgctggacatcatggtcaacgtc
ggccggaccgggcgtgtcactccgttcgggttgatggaacccgtcaaggtgtccggctcc
accgtgggcatggctacgctgcacaaccaggacgtcgtcaaggccaaaggcgtgatgatc
ggcgacatcgtgattcttcgcaaagccggtgacgtcatccccgaaattgtcggtccggta
ctggcgcttcgcgataagcaggatccgcccgtccgcgaattcgtcatgcccaccgaatgc
ccttcctgcggcactccgctcgcgccttccaaggagggcgacgtggacatccgctgcccc
aacggaaagtcctgcccttcccagttgcgtgagcgggtcttccacgtggccagccgtggc
gccttcgatatcgaggccctgggctgggaagcggccatcgcgttgacccagcccgcagta
ccggagattcccccgctgaccagcgaggccgcgctgttcgacttgacccgcgaagatctg
gcaaacgtgatgatccgccgcgagaagaaatccaagggcgtcggcacaggccagtacgaa
ctcgttccctacttctatacgaaggccacggccaagacgccgtccaagcccactgccacc
acggagaagcttttcgcggagctggagaaagccaagaagcagcccctgtggcgggtgctt
gtagcgttgtccatccgccacgtcggacccaccgcctcgcgggcactggcaaccaacttc
ggaagcatggatgccattcggaatgcgaccgaggaacaactggcccatgtggacggcgtc
ggaccgaccattgcggctgcccttaaggaatggttcgcggttgactggcacaacgagatc
gtggacaggtgggctgccgccggcgttcggatggaggatgaccgggatacggctactccg
cgcacgcttgaaggactgaccgtggtggtcacgggaaccctgccgaacttcagccgggat
gaggccaaggaagccatcatcatccgtggtggcaaggcggcaggctcggtatcgaagaac
accagctatctggtggccggtgaaagcgctggtaccaagctggacaaggcggaacagctc
gggatcccggtgttggatgaggacggattccgtgagctcctggccaatgggccagctgcg
ccggaaggtcagcccgccacgtccgaagaccgggagaatggcgatgaagctgccgcgcgg
gaaggggaatccgaatga
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