Paenarthrobacter sp. YJN-D: HMI60_10950
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Entry
HMI60_10950 CDS
T10599
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
payn Paenarthrobacter sp. YJN-D
Pathway
payn03030
DNA replication
payn03410
Base excision repair
payn03420
Nucleotide excision repair
payn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
payn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMI60_10950 (ligA)
03410 Base excision repair
HMI60_10950 (ligA)
03420 Nucleotide excision repair
HMI60_10950 (ligA)
03430 Mismatch repair
HMI60_10950 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
payn03032
]
HMI60_10950 (ligA)
03400 DNA repair and recombination proteins [BR:
payn03400
]
HMI60_10950 (ligA)
Enzymes [BR:
payn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMI60_10950 (ligA)
DNA replication proteins [BR:
payn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMI60_10950 (ligA)
DNA repair and recombination proteins [BR:
payn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMI60_10950 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMI60_10950 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMI60_10950 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMI60_10950 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Hemerythrin
BRCT_2
Zn_ribbon_TFIIB
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QOT22008
LinkDB
All DBs
Position
2352457..2354751
Genome browser
AA seq
764 aa
AA seq
DB search
MSTPETANPVETTGDHSPAVAVEGEGTPPAESLRDEHEQLADLVRKYRYAYYQEDSPTVS
DAEFDELYRRLEELEAVHPELVTNDSPTQEVGGEVSSAFAAVEHLQRMYSLDDVFSLEEL
EAWVRKAEASVAKLGESVPPIAWLTELKIDGLAVNLLYRDGKLVRAATRGDGTTGEDITH
NVLTIKEIPRELSGSGFPSEVEIRGEVFIPSKAFVEFNETLVAAGKAPLANPRNAAAGSL
RQKDPAETAKRPLSMYVHGIGAREGLEAKSQSGTYKLLEQWGLPVSPYLKVLGSFEEVLE
FIAHYGTHRHDLQHEIDGIVVKIDDFATQRALGYTSRVPRWAAAYKYPPEEVHTKLLDIA
VNVGRTGRVTPFGLMEPVKVAGSTVGMATLHNQDVVKAKGVMIGDIVILRKAGDVIPEIV
GPVLALRDKQDPPVREFVMPTECPSCGTPLAPAKESDVDIRCPNAKSCPSQLRERVFHLA
GRGAFDIEALGWEAAIALTQPAEPETPPLTSEAGLFSLTREALADVKIRREKRSKGVGTG
EYELVPYFYTKGTAKSPSKPTATTEKLFVELEKAKKQPLWRVLVALSIRHVGPTASRALA
TAFGSMDAIRSATEEQIAHVDGVGPTIAAALKEWFAVDWHNDIVDSWAAAGVRMEDERDT
SMPRTLEGLTVVVTGTLPNFSRDEAKEAIIIRGGKASGSVSKNTSYLVAGESAGTKLDKA
EQLGIPVLDEDGFRELLANGPAKTEAEPEAEADPEATAAEAETE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacaccagaaactgcgaatccggtagaaaccacaggtgaccactccccggctgtt
gccgtggagggggagggaacaccgcccgcggagtccttgcgggacgagcatgagcaattg
gcagacctcgtccgcaagtaccggtatgcgtattaccaggaggactcgcccacggtttcc
gatgcggagttcgacgaactctaccgtcgcctcgaggaactcgaagctgtccacccggaa
ctcgtcaccaatgattcccccacccaggaagtgggcggggaagtctcctcggcgttcgct
gccgtggaacacctgcagcgcatgtacagcttggatgacgtcttctccttggaagaactt
gaggcctgggtccggaaggccgaggcttccgtggcgaaactcggggaaagcgttccaccc
attgcgtggctgacggagttgaagatcgacgggctcgccgtgaacctgctgtaccgggac
ggcaaactggtccgtgccgctacacgtggcgatggcaccaccggtgaagacatcacccat
aacgtgctcaccatcaaggagatcccgcgggaactcagtggctccggattcccctcggaa
gtggaaatccgtggggaggtgttcattccctccaaagcgttcgtggagttcaacgagaca
ctcgtggccgcgggcaaggcgcccctcgccaatccgcgcaacgccgcggccggttcattg
cgccagaaggacccggccgagacagccaagcgacccctgagcatgtacgtgcacggcatc
ggtgcgcgcgaaggtctggaagcgaagagccagtccgggacctacaagctgctggagcag
tggggtctcccggtcagcccctacctcaaagtgctcggctcctttgaggaagtgctggag
ttcatcgcccattacggaacgcaccgtcacgaccttcagcatgagatcgacggcattgtg
gtcaagatcgacgacttcgccacccagcgcgccctcgggtacacctcccgagtccccaga
tgggccgcagcgtacaagtacccgccggaggaagtgcacaccaagctcctggacatcgcg
gtcaacgttgggcgcacaggacgcgtgactcctttcggattgatggaacccgtgaaagtg
gccggctccacggtggggatggccaccctgcacaaccaggatgtggtcaaagccaagggc
gtcatgatcggcgacatcgtgatcctccgcaaagccggcgatgtcattccggaaatcgtg
gggcccgtgctggcactgcgcgacaagcaggatcctccggtgcgcgaattcgtgatgccc
accgagtgcccgtcctgtggcactccgttggcaccggcgaaggaaagcgacgtggacatc
cgttgccccaacgccaagtcctgcccttcccaactccgtgagcgcgtgttccacctggcc
ggccgcggtgctttcgacatcgaagccctgggctgggaagccgccatcgcactcacccag
ccggcagagcccgagaccccgcccctgacgagcgaggccggcttgttcagcctgacccgt
gaagccctggcggacgtgaagatccgtcgtgaaaagcgttccaagggtgtgggaaccggt
gaatacgagctcgttccgtacttctacaccaagggaacagccaagtcgccgtcgaagccc
acagccaccacggagaagctcttcgttgagctggagaaggccaagaagcagccactgtgg
cgcgtgctggtggctctgtccatcaggcacgtaggtcctacggcatcccgggccctggcc
accgcctttggcagcatggacgccatccgcagcgccactgaggagcagattgcccatgtt
gacggcgtaggccctaccatcgcggcggcactgaaggaatggttcgctgtggactggcac
aacgacatcgtggacagctgggctgcagccggagtgcggatggaggacgagcgggatacc
tcaatgccgcggacccttgagggactcactgtcgtcgtcaccggaaccctgcccaatttc
agccgggatgaggccaaggaagccatcattatccgcggcggcaaggcctccggatccgtt
tccaagaacaccagctacctggtggccggcgagagtgccggcaccaaactggacaaggcc
gagcaactgggtattccggtgttggatgaggacggattccgtgagctgctggccaacgga
ccggccaagaccgaagcagagcccgaagccgaagcagaccctgaagccacagcggcggag
gctgaaacagaatga
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integrated database retrieval system
