Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a1707
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Entry
PSEBR_a1707 CDS
T01472
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03030
DNA replication
pba03410
Base excision repair
pba03420
Nucleotide excision repair
pba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSEBR_a1707
03410 Base excision repair
PSEBR_a1707
03420 Nucleotide excision repair
PSEBR_a1707
03430 Mismatch repair
PSEBR_a1707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pba03032
]
PSEBR_a1707
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a1707
Enzymes [BR:
pba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSEBR_a1707
DNA replication proteins [BR:
pba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSEBR_a1707
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSEBR_a1707
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSEBR_a1707
MMR (mismatch excision repair)
DNA ligase
PSEBR_a1707
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSEBR_a1707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AEA67914
UniProt:
F2KEJ8
LinkDB
All DBs
Position
2088457..2090814
Genome browser
AA seq
785 aa
AA seq
DB search
MNAVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQ
RVGSVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTEGLDLPMGDLLGGGAAVEYSC
EPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPLLEVRG
EVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVTA
DIADTHIGNLKQLKAWGLPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPASEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPDDARPVEIPRQCPVCGS
HVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQAAVPQVLTYLPDVGLEVAHEIHSFFEDPHNRQVIKDLLRHGL
EIQDQGELGAEFSASTTLGGFLDKLNIPSVGPGGAQKLADKFGSLEAVMNADWLDMRQAL
PEKQANAVREFFAVAANRQQAEAAEQQLRDFGMHWQSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEEAFVVFLSQ
HGITV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgttgaaacccgcatccaacagctgcgcaccgagctggatcagcacaactac
cgctatcacgtcctcgacgaaccgagcatcccggacgccgagtacgaccgcttgttccac
gagctcaaggccctggaagagcaacacccggagctggtgaccagcgattccccgacccag
cgcgtcggcagcgtggcgctgtcggcgtttagccaggtgcgtcacgagatcccgatgctc
agcctgggcaacgccttcgacgaaaccaccatgcgcgaattcgaccggcgggtgaccgaa
ggcctcgacctgcccatgggcgatttgctgggcggtggcgcggcggttgaatacagctgc
gagccgaaactcgatggcctggcggtcagcctgttgtatcaggacggcatgctggtgcgc
ggagccacgcgcggtgatggcaccacgggcgaagacatcagcgtcaacgtgcgtaccgtg
cgcaatattcccctcaagctgcagggcagcggctggccgccattgctggaagtgcgcggc
gaggtgtacatgtccaaggccggcttcgagcgcctcaacgccacgcaactggaagcgggt
ggcaagaccttcgccaacccgcgcaacgcggcggcggggagcctgcgccagctggattcg
aagatcaccgccaaccgcccgctggaattctgctgctacggtatcggtcaggtgaccgcg
gacattgccgatacccatatcggcaatctcaagcagctcaaggcctggggcctgcccatc
agccgtgaattgaagctggcccacggtattgacgagtgcctggattactaccgtgacatc
ggcgagcggcgcaacgcattgccgtatgaaatcgatggtgtggtgttcaaggtcaacagc
atcgcttctcagcgcgaactgggtttccgcgcccgggaaccacgctgggccatcgctcat
aaattcccggcctctgaagaactcaccgagttgctggacgtcgagttccaggtcggccgc
actggcgccgtgacgcccgtggcgcgcctcaagccggtcaaggtcgctggcgtgaccgtg
gccaacgccacgttgcacaacatggacgaagtggcgcgcctgggcctgatgatcggcgac
accgtgatcatccgccgtgccggcgacgtgatcccgcaagtggtgcaagtgatcaccgag
cgccgcccggacgatgcccgccccgtggagatcccccggcagtgtccggtgtgtggttcc
catgtcgagcgcacgcaactgatcaagcgcagcaagggccgtgaaaccatcagcgaaggt
gcggtgtaccgttgcgtcggtcgcctggcctgtggcgcgcagctcaagcaggcgatcatt
catttcgtgtcgcgccgggccatggacatcgagggcctgggcgagaagagcgtcgagcaa
ctggtggatgaggggctggtgggttcgcccgccgatctgtatgccctgaccttcgagcag
gtggtcgacctggaaggtttcgccgaactgtcgagcaagaacttgctggcggccatcgtc
gacagcaagaagccgagcctggcgcgtttcatctacgccctcggtatcccggacgtgggc
gaggagaccgccaaggtcctggctcgctctcttggttcgctggagcgcgtacaagcggct
gtgccccaggtgctcacctacttgcccgatgtcggcctggaagtggcccacgagatccac
agcttcttcgaagacccacacaaccgccaggtgatcaaggacctgctgcgccacggtctc
gagatccaggaccagggcgagttgggcgccgagttctccgccagcacgaccctgggtggc
tttctcgacaagctgaacatcccctcggtcgggccgggcggggcgcagaaactggcagac
aagttcggttcactcgaggcggtgatgaacgccgactggctggacatgcgtcaggcgttg
ccggaaaagcaggccaacgccgtgcgcgagtttttcgccgttgccgccaaccgtcagcag
gccgaggcagcggagcaacagttgcgcgactttggcatgcattggcagagcgagaagaag
gtcgtcgaaggcttgcccgaggcaggtcacacctgggtgctgaccggttcgctggagttg
atgagtcgcgacgtcgccaaggacaagctggagagcctgggggccaaggtcgccggttcc
gtgtcggcgaaaacccactgcgtggtggcggggccgggtgccggttcgaaattgaccaag
gccaatgagctggggctcaaggtgctggatgaagaggcgtttgtcgtctttctgagtcag
catggcatcacggtttag
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