Pseudomonas brassicacearum subsp. brassicacearum NFM421: PSEBR_a5274
Help
Entry
PSEBR_a5274 CDS
T01472
Name
(GenBank) putative exported DNA-ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pba
Pseudomonas brassicacearum subsp. brassicacearum NFM421
Pathway
pba03030
DNA replication
pba03410
Base excision repair
pba03420
Nucleotide excision repair
pba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSEBR_a5274
03410 Base excision repair
PSEBR_a5274
03420 Nucleotide excision repair
PSEBR_a5274
03430 Mismatch repair
PSEBR_a5274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pba03032
]
PSEBR_a5274
03400 DNA repair and recombination proteins [BR:
pba03400
]
PSEBR_a5274
Enzymes [BR:
pba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSEBR_a5274
DNA replication proteins [BR:
pba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSEBR_a5274
DNA repair and recombination proteins [BR:
pba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSEBR_a5274
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSEBR_a5274
MMR (mismatch excision repair)
DNA ligase
PSEBR_a5274
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSEBR_a5274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AEA71770
UniProt:
F2K643
LinkDB
All DBs
Position
6390385..6392058
Genome browser
AA seq
557 aa
AA seq
DB search
MPPFLYALACLVFIAIPALAAPCPDWPTERARAEIAALQQQIDTWDDGYHRLGQSPVADE
LYDQSRAQLGQWRRCFNLAAPDDPPRSTGGKVPHPVVHTGLEKLKDADAVGAWLRGREDV
WAQPKVDGVAVTLVYRKGRLHQAISRGDGVQGHDWTTNARKIGAIPQRLHQSVDLVVQGE
LYWRLEAHVQASSGSVNARGTMAGLMARSNLTVHDGVYIDLFVWDWPEGPDTLPERMAAL
NALGFADTLDYNQPVRTLADAEQWRDHWYRTPLPFASDGIVLHQSRRPPADRWQARAPFW
SVAWKYPYAQALAEVRKVHFKVGRTGRITPVLELERIRLDDRWIRRVSVSSLKRWEEMDI
RPGDRVAISLAGLTIPRLDSVVLRSVERQNLNVPAETDHHFLSCWQPTPGCESQFLARLG
WLSGKQGLALPHVGPGTWEKLLAAGRLDGLLDWMTLDAAELANIAGFGEHSSTRLLASLH
SARQRPFEQWLKALGLPPAGEARLEGPWQALAERSTEQWQAEAGIGPGRAAQLSAFFRDP
QVLALSDVLRTAGVDGF
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgccaccgtttttgtatgcactcgcctgtcttgtcttcattgccattcctgcgctcgcc
gcgccctgtcccgactggcccactgaacgcgcccgggccgagatcgccgcgctgcaacag
caaatcgacacctgggacgacggctatcaccgcctcggtcaatcgccggtggccgacgaa
ctgtatgaccagtcccgcgcacagttgggccaatggcgccgctgcttcaacctcgcggca
cccgacgatccgccgcgctcaacgggcggaaaggttccgcaccccgtggtccataccggc
ctggaaaagctgaaggacgccgacgccgtgggggcctggctgcgcggtcgggaggacgtc
tgggcccagccgaaagtcgacggtgtggcggtaaccctggtctatcgcaagggtcgcctg
catcaggcaatcagccgtggcgatggagtccaaggacatgactggaccacgaatgcgcgc
aagatcggcgccatcccccagcgactgcaccagtccgtagacctggtcgtccagggcgag
ttgtactggcgcctggaggcccatgtccaagccagcagcggcagcgtgaacgcccgcggg
accatggcaggcttgatggcacgcagcaatttgacggtacacgatggggtgtatatcgac
ctgtttgtctgggactggccggaagggccggacaccctgcccgagcgaatggccgcgctg
aacgccttgggcttcgctgacaccctcgactacaaccaacctgtgcggacattggccgat
gccgagcagtggcgcgatcactggtaccgcacgccgctgccattcgccagcgacggaatc
gtcctgcaccagagccgccgcccacccgccgaccgctggcaggccagggcgccgttctgg
agcgtggcctggaaatacccgtatgcccaggcgctggccgaagtgcgcaaggtgcacttc
aaggtcggtcgcaccggacgcatcacccccgtactggagcttgaacgcatccgactcgac
gaccggtggattcgccgggtaagtgtcagttccctcaagcgttgggaagagatggacatt
cgccccggcgaccgtgtcgctatcagcctggccgggctgaccatcccacggctcgacagc
gtcgtgctgcgcagcgtcgagcggcagaacctcaacgtccctgcggaaaccgatcatcac
ttcttgagttgctggcaaccgacacccggctgtgaaagccagttcctcgcgcgactgggc
tggctcagcggcaaacaagggcttgccctgccccacgtcggccccggcacctgggaaaag
ctgctggccgccggacgactcgacggattgctggattggatgaccctcgatgccgccgag
cttgctaacattgccggcttcggcgaacacagcagcacccgcctgctcgccagcctgcac
agcgcccgacaacgcccgttcgagcaatggctcaaggccctgggcctgccgcccgctggt
gaggcccggctggaggggccgtggcaggcgctggccgagcgcagcaccgaacaatggcaa
gccgaggccggcatcggaccgggacgcgccgcgcaactgagcgcattttttcgcgacccg
caggtgctggccttgagtgacgtattacgcactgccggggtcgacggtttttaa
DBGET
integrated database retrieval system
