Paenibacillus barcinonensis: HUB98_13880
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Entry
HUB98_13880 CDS
T06922
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbac
Paenibacillus barcinonensis
Pathway
pbac03030
DNA replication
pbac03410
Base excision repair
pbac03420
Nucleotide excision repair
pbac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HUB98_13880 (ligA)
03410 Base excision repair
HUB98_13880 (ligA)
03420 Nucleotide excision repair
HUB98_13880 (ligA)
03430 Mismatch repair
HUB98_13880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbac03032
]
HUB98_13880 (ligA)
03400 DNA repair and recombination proteins [BR:
pbac03400
]
HUB98_13880 (ligA)
Enzymes [BR:
pbac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HUB98_13880 (ligA)
DNA replication proteins [BR:
pbac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HUB98_13880 (ligA)
DNA repair and recombination proteins [BR:
pbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HUB98_13880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HUB98_13880 (ligA)
MMR (mismatch excision repair)
DNA ligase
HUB98_13880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HUB98_13880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
DNA_ligase_ZBD
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QKS57285
UniProt:
A0A2V4VLX2
LinkDB
All DBs
Position
complement(2998727..3000739)
Genome browser
AA seq
670 aa
AA seq
DB search
MDPMHRMEQLVTELNQHNYQYYTMDQPQISDKEYDLLYDELVTLEQESGMVLPDSPTQRV
GGELLKGFTPHRHLSPLWSLDKAQNIEQLRNWNTRVLKLVNDYNSKNPESPLPDPGYVIE
LKFDGLTLNLTYTNGELVQASTRGNGTVGEGILAQVRTIKSVPLKIPYTGGTIEVQGEGI
MNLSVLNQYNETAAEPLKNARNAAAGALRNLNPKTTAERRLNAYFYNIGYSDDIQFATHQ
EMMDFLRENRFKVNPSITYFHEFDDVMEQLAAIQENRGQLDYLIDGAVIKLTDMRTREVL
GYTDKFPRWAVAYKFEAEETTTVLNEVVWNVGRTGKVTPLARVEAVELAGVTVQNCTLNN
VGDIERKNLKFALGSRVFIRRSNDVIPEILGKVTEENDGEEIIYPENCPACGFPLEQRGA
HLFCNNKLACKPQTVARISHFASRDAMDIETFSEKTAIQLYDELNVREPADLYTLQFDDL
VKLERFGEKKANNLLAALEQSKDRDLASFLYSLGIPNTGKSTTRMLAEHYRDLHAIMNAT
VEELIELPDVGGIVAESIVNFFADPFTQAAIEKMLNLGVKAQAPEAPAVVAEDSFFSGKT
VVLTGTLHQLTREEATQRLEALGAKVTGSVSKKTDLVIAGEKAGSKLTKARDLGIPTIED
EDELVRLLNS
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggacccgatgcaccggatggagcaactcgttaccgagctaaaccagcataattatcag
tactatacgatggatcagccgcagatcagtgataaggaatatgacctgctgtatgatgag
ctggttacgctggagcaggaaagcggcatggtattgcccgattctccgacacaacgtgta
ggaggcgaactgctcaagggattcaccccgcatcgtcatttatccccactatggagcttg
gacaaggcgcagaacatcgagcagctgcgcaattggaatactcgtgttctgaagctggtg
aatgactacaatagcaaaaacccggagagtcccttgccggaccccggttatgtcattgaa
ttgaaatttgatggactcaccttgaacctcacatataccaacggcgaactggtgcaggct
tctacgcgcggtaacggaacggtgggtgaaggtattctggcgcaggtcagaacgatcaag
tctgttccgctcaaaattccgtatactggcggtaccattgaagtgcagggtgaaggcatc
atgaacctctctgttctgaatcaatacaatgaaacggctgcggagccgctcaaaaatgca
cgcaatgcagcagcaggtgcgcttcgtaatctgaatccgaaaacgacggctgagcgtcga
ttaaatgcctatttttataatatcggctattcggacgacattcagtttgctacgcatcag
gagatgatggacttcctgcgtgagaatcgtttcaaagtgaatccatccatcacctacttc
catgagtttgatgatgtgatggagcagcttgcagccattcaggaaaatcgtggacagctc
gattacctgattgacggagctgtaattaagctgaccgatatgcggactcgtgaagtgttg
ggttatacagacaagttcccacgctgggcggtggcctacaagtttgaagcagaagagact
acaaccgtgctgaacgaagtcgtgtggaatgtcggtcgaaccggcaaagtgactccattg
gcgagagtagaggctgttgagcttgcgggagttaccgtgcagaactgcaccctgaacaat
gtaggcgatatcgagcgcaaaaatttgaagtttgctttgggttcacgcgtctttatccgc
cgctccaacgacgtcatccctgagattctcggcaaagtgactgaagaaaatgatggtgaa
gagatcatctatccagagaactgcccggcatgcgggttcccgctggagcagcgcggagcg
cacttgttctgtaacaacaagcttgcctgcaaaccacagaccgtagctcgtatttctcat
tttgcttcacgggatgcgatggatatcgagacgtttagtgagaaaacagccatacagctt
tatgatgaattgaacgtgagagaaccggctgatctatatacactgcagtttgatgatctg
gtgaagctggagcggtttggcgaaaagaaagcgaacaaccttcttgctgcgcttgagcag
agtaaagaccgagacttggcttcgttcctctattccctgggaatcccgaacactggcaaa
tcaactacacgtatgctcgctgagcattaccgtgatctgcacgcgatcatgaacgcaact
gtggaggaattgattgagctgcctgacgtgggtggtatcgtagcggagagtatcgttaat
ttctttgctgatccattcacccaggcggcaattgaaaaaatgctgaatctgggcgtgaaa
gcacaggcaccggaagctccggctgttgtggcagaggactccttcttcagcggcaaaacg
gtagtgctcacaggtacactccatcagttgacgcgtgaagaggcaacacaaaggcttgaa
gcacttggtgcgaaggtcactggcagcgtatccaagaagacagacctcgtcattgccgga
gagaaggcaggtagcaaattaacgaaggcacgtgatcttggaatcccgaccatcgaggat
gaggatgagctggtacgtttgttaaattcgtaa
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integrated database retrieval system
