Roseinatronobacter sp. S2: P8S53_08520
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Entry
P8S53_08520 CDS
T09279
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbae
Roseinatronobacter sp. S2
Pathway
pbae03030
DNA replication
pbae03410
Base excision repair
pbae03420
Nucleotide excision repair
pbae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P8S53_08520 (ligA)
03410 Base excision repair
P8S53_08520 (ligA)
03420 Nucleotide excision repair
P8S53_08520 (ligA)
03430 Mismatch repair
P8S53_08520 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbae03032
]
P8S53_08520 (ligA)
03400 DNA repair and recombination proteins [BR:
pbae03400
]
P8S53_08520 (ligA)
Enzymes [BR:
pbae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P8S53_08520 (ligA)
DNA replication proteins [BR:
pbae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P8S53_08520 (ligA)
DNA repair and recombination proteins [BR:
pbae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P8S53_08520 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P8S53_08520 (ligA)
MMR (mismatch excision repair)
DNA ligase
P8S53_08520 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P8S53_08520 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
zf-IS66
Auto_anti-p27
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
WFE73236
LinkDB
All DBs
Position
1793626..1795764
Genome browser
AA seq
712 aa
AA seq
DB search
MSSTSDMGGFQIVPVAEMTSEQAEGELARLADILNRANIAYHRDDAPIMPDADFDALRLR
NAQIEARFPDLVRPDSPAARVGAAPAAGFGKIQHARRMLSLANAFSNGDVEDFVDGIRRF
LGLAADSPLAFTAEPKIDGLSLSLRYEKGALVYAATRGDGATGEDVTANARTIDDIPSTL
RDGPDILEIRGEVYMTHQDFAALNSRQADAGGKVFANPRNAAAGSLRQLDASITRSRPLR
FFAYSWGDVSEPLADTQMAAIARLAQLGFCTNPQTHLCQSVQDMIAVYSAIEAQRASLGY
DIDGIVYKLNDLALQDRMGLRSTTPRWAIAHKFAAERAWTQLEAIEIQVGRTGALSPVAR
LVPVTVGGVVVSNATLHNEDYIMGRDSRGMVIRDGRDIRAGDWVEVYRAGDVIPKIRDVD
PGRRPDTAVPYEFPQTCPECGSPALREPGDSVRRCTGGMVCPAQAVERLKHFVSRAAFDI
EGLGAKQVESFWRDGWIATPKDIFTLKDRFGPGQPRQLKNREGWGEKSATNLFAAIDEKR
TIPLGRFIFSLGIRHVGEATANMLASHYGTWEALRTALQDAKDPESAARLDLLSIDGVGG
VLADSLISGFAAESDEIDALARALTITPAQARASDSPVAGKTLVFTGTLEKMTRAEAKAR
AESLGAKVAGSVSAKTDLLIAGPGAGSKARKAADLGVEVIDEDGWLAMIGAL
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
gtgtccagcacatcagacatgggcgggtttcagattgttccggtggcagaaatgacatca
gagcaggcagaaggtgaactcgcccggcttgccgatattctgaaccgcgcaaatattgcg
tatcaccgcgatgatgcaccaatcatgccggatgctgatttcgatgctttgcgacttcga
aatgcacagatcgaagcgcggtttcctgaccttgttcgaccagacagccccgcagcccgg
gttggtgcggcacctgccgccgggtttggcaagatacagcatgcacggcgcatgctctct
ctggcaaatgcattctcaaacggggatgtggaagattttgtggacggtattcgccggttt
ctggggttggcggcggacagcccgcttgcattcacagccgagcctaagattgacgggctt
tccctgtcgctgcgctatgaaaagggggcgcttgtctatgcggcaacccgtggtgatggc
gcgacgggcgaggatgtaaccgcaaatgcccgcaccattgacgacatcccgtcaaccctg
cgtgacggaccggatattctggaaatccgcggtgaagtttacatgacgcatcaggatttt
gcagcgttgaattcccgacaggcggatgcgggcggcaaggtttttgcaaacccccgcaat
gctgccgccggatcgttgcgccagttggatgccagcattacgcggtcccgcccgctgcgg
tttttcgcatattcctggggcgatgtatcagagccgctggcagatacccagatggcggca
atcgcgcggctggcgcagcttgggttctgcaccaacccgcaaacccatttgtgtcagtcg
gttcaggacatgattgcggtatattcagcgatagaagcgcagcgtgccagcttgggctat
gacattgacgggatcgtctacaagctgaatgatctggcgttgcaggacaggatggggttg
cggtctacgaccccgcgctgggcgattgcccataaatttgcggcggaacgtgcctggaca
caactggaagccattgaaattcaggtcggacgcaccggcgcgctgtcgccggttgcgcgg
ctggttcctgtcaccgtgggcggcgtggttgtgtcgaatgccacactccataatgaagat
tacattatggggcgcgattcgcgtggcatggttattcgtgatggtcgcgatattcgcgca
ggcgactgggtcgaggtgtatcgcgcaggcgatgtgattccaaaaatccgcgatgtcgat
cctggcaggcgccccgacacggcagtgccatatgagttcccgcaaacctgccccgaatgc
ggcagccccgccctgcgagagccgggggattccgtgcgccgctgcacgggcggcatggtt
tgccctgcgcaggctgtggagcggctgaagcattttgtcagccgtgcggcctttgacata
gaagggcttggtgccaagcaggtcgaaagtttctggcgcgatggctggatcgccacgcca
aaggatatattcaccctgaaggaccgcttcggtcccggccagccccgccaactgaaaaac
cgcgaaggctggggcgagaaatcggcgaccaatctgtttgccgcgattgacgaaaagcgc
acaattccccttgggcgtttcatattctcactgggaatccggcatgtcggcgaagcgaca
gcaaacatgctggccagtcattacggcacatgggaagccctgcggacagccctgcaagac
gcaaaagaccctgaaagtgccgcacgccttgatctgctatcaatcgatggcgtgggcggg
gtgctggcagactcgctgatttcggggttcgcggcagaaagcgacgagattgatgcgttg
gcgcgcgcgctgaccatcacccctgcacaagcgcgcgcaagcgacagccccgtcgcgggc
aaaacgctggtctttaccggcacattggagaagatgacccgcgccgaggccaaggcgcgc
gccgaatccctgggggccaaagtcgcagggtcggtatcggccaagaccgatttgctgatt
gccggtccgggtgccggatcgaaggccagaaaagccgctgatctgggcgtagaggtgatt
gacgaagacgggtggcttgccatgatcggtgcgctttga
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