Candidatus Bodocaedibacter vickermanii: CPBP_00908
Help
Entry
CPBP_00908 CDS
T10196
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbal Candidatus Bodocaedibacter vickermanii
Pathway
pbal03030
DNA replication
pbal03410
Base excision repair
pbal03420
Nucleotide excision repair
pbal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPBP_00908 (ligA)
03410 Base excision repair
CPBP_00908 (ligA)
03420 Nucleotide excision repair
CPBP_00908 (ligA)
03430 Mismatch repair
CPBP_00908 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbal03032
]
CPBP_00908 (ligA)
03400 DNA repair and recombination proteins [BR:
pbal03400
]
CPBP_00908 (ligA)
Enzymes [BR:
pbal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPBP_00908 (ligA)
DNA replication proteins [BR:
pbal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPBP_00908 (ligA)
DNA repair and recombination proteins [BR:
pbal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPBP_00908 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPBP_00908 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPBP_00908 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPBP_00908 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
HHH
RNA_ligase
S8_pro-domain
Motif
Other DBs
NCBI-ProteinID:
QOL20127
UniProt:
A0A7L9RU44
LinkDB
All DBs
Position
986163..988193
Genome browser
AA seq
676 aa
AA seq
DB search
MIDIQTKIQQLADTIRYHDSLYYESDAPEISDAGYDVLRQEYRDLIKQYPQFIPDNDPER
HVGSVAAAGFKKITHLKPMLSLDNAFDTDDILSFDERIHRFLNLDFSAPVEYVSELKIDG
LSCAVRYRKGKLVLAATRGNGVEGEDVTDNVKTISDIPHHIPFSDEEVEIRGEIYLSKAD
FLQLNEDRRLAGEALFANPRNAAAGSLRQLDSSITAKRPLRFFAYDLVSSISLKTHKETL
TLLETWGFSVNPDRKVCPDIRAGESFYNDIALRRAHLDYDIDGVVYKVNDLELQRRLGYV
SRSPRFATAHKFKAEQAVTRLNDIVVQVGRTGILTPVAELEPINVGGVLVSRATLHNEDE
INRKRLQIGDQVMIQRAGDVIPQVVESLTQHEHFTPYQLPSQCPVCQSETHRVEGEAARR
CVGGFQCDAQVVGRLKHFVSKQAFDIEGLGDKNIEFLYATQRVLVPSDIFTLQHRNGDAF
PPLEKEDGWGALSVKNLFAAINGARTIDLHRFIYALGIPQVGEVTAKILARHYPTWDGFM
EMLKTQEEALKELESLDGIGPVMAQDIVMFFHTSTQIEWVQNLLQHLTIVSSRQIQTGNL
PYDGKTIVFTGTLLNQGRQEAKALAERLGFKVVSSVSSKTDYVVVGEDPGSKATKAKELG
VTILSEDEWAALANKK
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgatagacatccaaacaaaaattcagcaattggcagatacaattcggtatcatgatagt
ctgtattatgaaagtgatgcgcctgaaatttcagatgcgggctatgatgtgttgcgtcaa
gaataccgcgatctaattaaacaatatccccagtttattcctgataacgatcctgaacgt
catgtggggtctgtggcagcagcgggatttaaaaaaataacgcatttaaaacccatgtta
tcgttggacaatgcctttgatactgacgacattttaagctttgatgaacgcattcatcgg
tttttaaatttagatttttctgcccctgtagagtatgtttcggagcttaaaatcgacgga
ttgtcgtgcgcggtgcgatatcgtaagggtaagttggtgctggctgcaactcggggaaat
ggtgttgagggtgaggatgtcaccgacaatgttaaaacgatttcggacataccgcatcac
attcctttttctgatgaagaggttgaaattaggggagagatctatttatcaaaagcagac
tttctgcagctgaacgaagatcgtaggttagcgggtgaagccttgtttgcgaatcccaga
aatgccgcagcgggatcgttgcgtcaattagattcctccattacggctaagcgtcccttg
cgtttttttgcgtatgatttagtgtcatcgatttctttaaaaacacataaagagacatta
acgcttttggaaacatggggtttttctgtaaacccagatcgaaaagtgtgcccagacatt
cgggcgggcgaatctttttataatgatatagccctgcgtagggctcatcttgactatgat
attgatggcgtcgtgtataaggttaacgatttggaattgcagcgacgattgggatatgta
tcccggtctccacgttttgcgactgcccataagtttaaagctgaacaagcggtgactcga
ttgaatgatatcgttgtgcaggttgggcgaacgggaatcttaacaccagttgcagagttg
gagcctatcaatgtgggtggggttttggtctccagagcaacccttcacaatgaggatgag
attaatcgtaagcgattgcaaatcggtgatcaggtgatgatacagcgtgcgggagatgtg
attccgcaagttgttgaatcgctaactcaacacgaacattttacgccatatcaactgcct
tcgcagtgtcctgtgtgtcaatcggaaacgcatcgcgttgaaggagaggctgccagacgg
tgtgtcggagggttccagtgtgatgcacaagttgttgggcgcttaaaacattttgtatca
aagcaagcattcgatattgaaggtttgggcgataaaaatattgagttcttatatgcaacc
cagcgcgttcttgttccatcagacattttcacattgcagcaccgtaacggcgatgcgttt
ccacctttagaaaaagaagacggatggggcgccttatcggtcaagaatctatttgcggca
attaatggtgcgcgcactatcgatttacaccgattcatatatgcgcttggaataccgcaa
gtgggcgaggttactgcaaagattttagcgcgtcattatccgacgtgggatggatttatg
gagatgttaaaaacccaggaagaggcgttaaaagaactggaatcgttagatggcattggt
cctgtaatggcgcaagatatcgtaatgttttttcacacatcaacacagatagagtgggtg
caaaatttattgcagcatttaactattgtgtccagtcgtcagatacaaacgggcaatctt
ccttatgatggtaaaacgattgtatttacgggaacgttattgaatcaggggcgtcaagaa
gcaaaagcgctggctgagcgtttgggctttaaggtggtcagcagcgtatcatctaaaacg
gattatgttgttgttggcgaagatccaggatcaaaggccacaaaagcaaaagagcttggg
gtgacaatattatctgaagatgagtgggctgctttggcaaacaaaaagtaa
DBGET
integrated database retrieval system
