Pogonomyrmex barbatus (red harvester ant): 105423732
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Entry
105423732 CDS
T04903
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
105423732
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pbar03400
]
105423732
Enzymes [BR:
pbar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
105423732
DNA repair and recombination proteins [BR:
pbar03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
105423732
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
DNA_ligase_IV
BRCT_2
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
SH3_Hsr9
Motif
Other DBs
NCBI-GeneID:
105423732
NCBI-ProteinID:
XP_011631928
UniProt:
A0A6I9VSM1
LinkDB
All DBs
Position
Unknown
AA seq
897 aa
AA seq
DB search
MTSGLLETRIEFKRLCDTLENVIRAHEIKKKEQILQTFFDECRNIGNKLKAEYPDSDASL
YPILRLILPHLERQRGPHNLKQISLAKLYARVYGFTKSSDSYKKLINYRESTSSEFLGND
FADRAYCILDKRLPRYSTGFTIAQINTFLDDITEKNATMQQKVETFRVLFRKITGFEMKW
VTRIILKDLRLNIGTQRILHIYHPDANDKFLVTSDLREICNELHDPKVKLKRGIRIFSHF
KPMLLERCNIENIGKLFRGNDLYYVQTKYDGERSQLHMKDGIFKYFTRRGYDITNKPGYG
ETGSSGFLTEIFTRCLNPNCHSFILDGELMAWHKEKRIFSTKGMNVDVKNLTTNSHHQPC
FIVFDVILHNDILLVDTPYKDRLKLLNDILTEEEGSVIVCQSTLISNREELIETFNIHLR
DNEEGLVVKKYDMKYKPNIRDGSGCYKIKAEYSDNLVQDIDMIILGGYYGEGKYIGMIKS
FMMGVVTPTSNEENSLQFLSVVSVSTGIGDEMLRYLQTKFTPYWIKERPENIMGPKKNQP
NVWILPEHSIILTIRATEIIRSNDYPIGYSLRFPRVTKMRTDKPWYNPCTTSEFLSLVKD
GGMIQKLTKRNITIYDVDQVSTFKLQRTANQNKSIEHNTYNKRIVPLTRLLDGKEICVIN
GNDELSKKQIEEILQQHSAKIVQNPMSTTFCVIVGNDKTIRGKEVVNSKKYDVVTLDWFK
RITNQSDWASLGDFLPWELLCSRKTTRLQIAKNYDEYCDNFIVDANEDSLKRSFGKIAQP
IIVELINNQLTVEDEKELDKELFNGNASPYSLFRNMIGFFENQSCCAKFKFRFMSGIVKD
SIDNSVTHVFVKNNKTSTNTRSMEAYEPTFVKIVKCKWIDECFRNGQICDITDYLID
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtggccttttagagactaggattgaatttaagcgattatgcgacactttggaa
aatgttatcagagcacatgagataaaaaagaaggaacaaattttgcaaacgtttttcgac
gaatgtcgaaatatcggcaacaaattaaaagcggaatatcctgactcggacgcatcgctg
tatcctatattaagattgatattgcctcatcttgagcgacagcgtggaccacataatttg
aagcaaatttcgctggcaaagctttacgctcgcgtatacggttttacgaaaagtagcgat
agttacaaaaaattgataaattatcgagagtccacgtcgagcgaatttttaggaaatgat
ttcgctgaccgagcctattgcatattggataaaaggttacctcgatatagtaccggattt
acgatcgcacaaattaacacgtttctcgatgatattaccgagaaaaacgcaacgatgcag
caaaaagttgaaacgttcagagtgctcttccgaaaaattacgggatttgagatgaaatgg
gtaacacgtatcattcttaaggatttacgacttaatataggaacgcaaagaatattacac
atttatcatccggatgcgaatgacaaatttctcgtaacgagtgatctacgagagatttgt
aacgaattacatgatccaaaggtcaaattgaaacgcggcatacgaatattttcgcatttt
aaaccgatgctcttagaaagatgtaacatcgagaatatcgggaaattatttcggggcaat
gacttgtattacgtacaaaccaaatacgacggcgagagatcgcaactacacatgaaagac
ggaatatttaaatatttcacgcgtaggggatatgatattacaaacaaacctggatatggt
gaaactggatcttcaggcttcttgaccgagatatttacgcggtgtttgaatccgaattgt
cattcttttatattggatggagaattaatggcttggcataaagagaaaagaatatttagt
accaaaggtatgaatgtcgacgtgaaaaatttaacgacaaatagtcatcatcaaccgtgt
tttatcgtgttcgatgtgattctgcataatgatatcttgcttgttgacacgccttataaa
gatagattaaaacttctcaatgatatattaacagaagaggaaggttctgtaattgtgtgt
cagtctaccttaatttcaaacagggaggagttgatagagacattcaatatacatctgcgt
gataatgaggaagggcttgtcgtaaagaaatatgatatgaaatataaacctaatatccga
gatggtagtggttgttataaaattaaagcggagtattccgacaatttagtacaagatata
gacatgattatacttggcggttactatggagaaggtaaatatataggaatgattaaaagt
ttcatgatgggcgttgtcactccaacaagcaacgaagaaaattcattacaatttctttct
gtcgtatccgtaagcactggaataggagatgaaatgctacgttatctccaaacaaaattt
acaccatattggattaaggaacgtcctgaaaatatcatgggtcccaaaaaaaatcagcca
aatgtgtggattcttccagaacattctataattttaacgatacgagcgactgagataata
cgcagcaatgattatccaattggatacagtttaagatttcctagagttacgaaaatgaga
acggataagccatggtacaatccatgtactacttctgaattcttatctttggtcaaagat
ggaggaatgatccaaaagttaaccaaacgaaacattactatatatgatgtcgatcaagta
tcaacttttaaattacaaaggacagcgaatcaaaataaatcgattgaacataatacgtac
aataagcgaatagtgccactcacacgattattggatggaaaagaaatttgtgtaataaat
ggtaacgatgaattatcgaagaagcaaattgaagaaatattacagcagcatagtgcaaaa
attgttcaaaatccaatgagtacaactttctgtgtgatagtaggcaatgataaaacgata
cggggaaaagaagtagtaaacagtaaaaaatacgatgttgtaactctggattggtttaaa
cgtattaccaatcaatccgactgggcctcgttaggtgattttttaccgtgggaattatta
tgtagccggaaaactactagactccaaattgcaaaaaactatgatgaatattgcgataat
tttatcgttgatgcaaatgaggacagtttaaagcgttcattcggcaaaattgctcaaccg
attattgttgagttgataaataatcagttaactgttgaagatgaaaaagaactggacaag
gaattgttcaatggaaatgcatcaccttattccttatttaggaatatgattggattcttt
gagaatcaatcgtgttgtgctaagtttaaattccgttttatgtcaggtatagttaaagac
agtattgataattctgttacacatgtctttgtaaaaaataacaagacaagtactaacaca
agaagtatggaggcatatgagccaacatttgtaaaaattgtgaaatgtaaatggattgat
gaatgtttccgaaatggtcaaatatgtgatattacagactatctgattgattaa
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