Pogonomyrmex barbatus (red harvester ant): 105430142
Help
Entry
105430142 CDS
T04903
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pbar
Pogonomyrmex barbatus (red harvester ant)
Pathway
pbar03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pbar00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105430142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pbar03041
]
105430142
Spliceosome [BR:
pbar03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105430142
Complex C
U5 SnRNP specific factors
105430142
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
Roc
MMR_HSR1
Ras
ABC_tran
Motif
Other DBs
NCBI-GeneID:
105430142
NCBI-ProteinID:
XP_011641817
UniProt:
A0A6I9WGF9
LinkDB
All DBs
Position
Unknown
AA seq
981 aa
AA seq
DB search
MDADLYDEFGNYIGPDLASESEDENEYGNVGDDNEDRERSDEEMEEDKDESREQAEQGSS
MAVVLHEDKRYYPSALEVYGPEVETLVQEEDAQPLDKPLIAPTRKAKFQIKQQQLPETIY
SIEFLADMMDAPHLIRNVVLLGHLHHGKTTLVDCLVQQTHPYLHNITDEKPLRYTDTLFT
EQQRGVSTKATPVTLLLQDVKSKSYLLNIFDTPGHVNFSDEATAAIRLSDGAILIVDAAE
GVMLNTERLLKHAIQEKLALTVCINKIDRLVLELKLPPLDAYYKLRHIIEEINGLIALYS
SDTENPGFVSPAVGNVCFASSEYNVCFTLKSFAALYAKNYPGLNVNEFAKRLWGDIYFNP
KTRKFTKKPPHNTAQRSFIEFILEPLYKIFAQVVGDVDTTLPDVLDELGIRLTSEEMKMN
IRPLLRLVCTRFLGDMCGLVDMCVTHVPSPQAHAPIKVQHVYTGPIDSPLAQDMVNCDPN
GRLMIHSTKMYPTEDCTLFVVLGRVMSGTLEAGQRVRVLGEAYSRTDEEDSRVLTVGRLW
ISEARYSIELSRVPAGNWVLIEGIDRPIVKTSTITDLNNSEELHIFRPLKFNTQSVIKIA
VEPVNPSELPKMLDGLRKVNKSYPLLGTRVEESGEHVVLGTGELYLDCAMHDLRRMYSEI
DIKVADPVVAFAETVVETSSLKCFAETPNKRNKLTMIAEPLERGLAEDIEAEHVRITWNK
KRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVDKTLLNSARDAIIQGFQ
WGTREGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPY
LFVEVQAPADCVSAVYTVLAKRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHT
QGQAFCLSVFHHWQIVPGDPLDKSITIRPLEPQPATHLAREFMLKTRRRKGLSEDVSINK
FFDDPMLLELARQDVLLNYPL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggacttatatgatgagtttggaaattatatcggtcctgatctggcttcggag
agtgaggatgaaaatgaatatggtaatgttggcgacgacaacgaagatagagaaagatcc
gatgaagaaatggaagaagacaaggatgaatcgcgagagcaagcggagcaaggatcttct
atggcagttgtattgcatgaagataaacgatattatcctagtgcattagaggtgtatgga
cctgaggtagaaacacttgtacaagaagaagatgcccaaccattagataaaccattaata
gcacctaccagaaaagcaaagtttcaaataaagcagcagcagctgcctgaaaccatatat
agcatcgaatttttagcagacatgatggatgcgccacatctcattagaaatgtagtttta
ttgggacatcttcatcatggcaaaactaccttggttgattgtttggtacaacaaacacat
ccttatctacacaacataactgatgagaaaccactgaggtatacagatacattgtttacc
gagcaacaaaggggcgtttccacaaaagcaacacccgttactcttctgctacaagatgtt
aaatccaagtcatatcttttaaatatatttgatacgcctggccatgtaaatttttctgat
gaggcaaccgcagcaatccgcctatcagatggtgcaatcttgattgttgacgctgcagaa
ggtgtgatgctgaataccgagcgtctgcttaagcatgcgattcaggaaaaactcgctttg
acagtttgtataaacaaaatagatcgtttggtattggagttgaaactgccaccgttggat
gcttactacaaattgcggcatattatcgaagaaatcaacgggctaatagcattgtattct
tcggacacagagaatcctggctttgtttcacccgctgtcggaaatgtttgctttgctagt
tccgagtataacgtgtgctttactctgaaatcgtttgccgcgctctacgccaagaactat
cctggactcaacgtcaatgaatttgctaaacgactttggggtgatatctattttaatcct
aaaacacgaaaatttaccaagaaaccaccgcataatacggcacaacgaagttttatcgag
tttatcctggagcctttgtataagatattcgcacaagttgtcggggatgtagacacaaca
ttgcccgatgttttggacgagctcggtatacgattaacatcggaagaaatgaaaatgaat
atacgtccattgctaagactcgtttgtacgcgattcttaggagatatgtgtggattagtc
gacatgtgtgtcactcatgtacctagtccgcaagcacatgcacccattaaagtacagcat
gtctacactggtccgatagattcgccgcttgcacaagacatggttaattgcgatccaaat
ggaagattgatgattcatagtacaaaaatgtacccaaccgaagattgcactttatttgtg
gtacttggtagagtaatgtctggtacattagaagcagggcagcgtgttcgcgtattaggt
gaagcgtattcacgtacggacgaggaggattcacgcgttctcacagtgggcagattgtgg
attagcgaggcgcgttactcgatcgagctcagtcgtgtacctgcgggtaattgggtcctc
atcgagggtatcgatcggccgattgtgaagactagcactatcacagatcttaacaattca
gaggaattgcacatctttcggccactcaagtttaacactcagagtgttattaaaatcgct
gtcgagccggtcaacccatccgaattgccgaagatgttggatggtttgcgaaaggtaaac
aagagctatccactgctgggcacacgagtggaggaaagtggcgagcacgtcgtgctggga
actggcgaactatacctcgattgtgcgatgcacgatttgcgtcgcatgtattccgagatc
gacataaaggtggccgatccggtagttgctttcgcggagactgttgtggagaccagttct
ctcaaatgcttcgctgaaacgccgaataaacggaataaattgacgatgatagcggagccg
ctcgagaggggtcttgccgaagatatagaagccgaacacgttcgtattacatggaataaa
aagagacttggagagtttttccaaacgaaatatgattgggacttgttagcagcgcgaagc
atatgggcgttcggtcccgattctacagggcctaacattctagtggatgacactctacct
tctgaagtagacaaaacattgttgaacagtgctcgcgatgctatcattcaaggctttcaa
tggggaactcgcgaaggaccgttatgcgaagaaccaatccggaatgttaagttcaagata
cttgacgcagttatcgcgcaggagccacttcatagaggaggtggacaaatcattcctact
gccagacgcgtcgcgtattccgcttttctcatggcaactccgcgtctaatggaaccgtac
ctgttcgtcgaggtacaagcgcccgcggactgtgtgtctgctgtctataccgttctggcg
aaacggcgaggtcacgtaacgcaagatgcccccgtcccgggtagtccgttatatacgatc
aaggcattcataccagcaatcgacagtttcggcttcgaaaccgatttacgaacgcacacc
caaggacaggcattttgtctgtccgtttttcatcattggcagattgtacccggagatcct
ttggataagagcatcaccatcagaccgttggaaccgcagccagccacccatcttgccaga
gagtttatgctaaaaacgcgaagacgaaagggactatccgaagacgtatccatcaacaag
ttcttcgatgatcctatgctgctcgagttggcccgacaagacgtactactaaattatcct
ctttaa
DBGET
integrated database retrieval system
