Polaribacter batillariae: JL193_13625
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Entry
JL193_13625 CDS
T08207
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbat
Polaribacter batillariae
Pathway
pbat03030
DNA replication
pbat03410
Base excision repair
pbat03420
Nucleotide excision repair
pbat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JL193_13625 (ligA)
03410 Base excision repair
JL193_13625 (ligA)
03420 Nucleotide excision repair
JL193_13625 (ligA)
03430 Mismatch repair
JL193_13625 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbat03032
]
JL193_13625 (ligA)
03400 DNA repair and recombination proteins [BR:
pbat03400
]
JL193_13625 (ligA)
Enzymes [BR:
pbat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JL193_13625 (ligA)
DNA replication proteins [BR:
pbat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JL193_13625 (ligA)
DNA repair and recombination proteins [BR:
pbat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JL193_13625 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JL193_13625 (ligA)
MMR (mismatch excision repair)
DNA ligase
JL193_13625 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JL193_13625 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
5_3_exonuc
HHH_3
RNA_lig_T4_1
DUF948
AphA_like
HNOB
Motif
Other DBs
NCBI-ProteinID:
QTD37144
LinkDB
All DBs
Position
3074477..3076474
Genome browser
AA seq
665 aa
AA seq
DB search
MTVLERIQLLREELNNHNYNYYVLDNATISDFEFDIKLKELEKLEAENPEFFDINSPTQR
VGGAITKNFETVVHKNRMYSLDNSYSKEDLLDWEKRVQKGLGREDLEYTCELKFDGASIN
LTYENGKFIKAVTRGDGFQGDNVTANVKTIRSIPLSIKKDFVSNFQMRGEIILPLEGFNK
MNEERAANGEEEYRNPRNTASGSLKLQDSAEVAKRPLDCLLYQVVTEERKYKTHFEILEN
ARKVGFKVPKTIKLAKSIDEVFEFVNHWDKKRHDLPYETDGVVVKVNNLQQQEELGYTSK
APRWAIAYKFKAEQVATVLNKITYQVGRTGAITPVANLKPVQLAGTTVKRASLHNADQIE
KLDIREGDTVFVEKGGEIIPKIIAVDFTKRPTNSQPTIYATNCPECNTKLVRTQGDAKHY
CPNEFGCAPQITGRIQHFISRKAMDIDGLGGETVDLLRKVGLIQNYADLYDLKIEQIIPL
ERMAEKSAQNLIAGIEKSKKIPFEKVLFALGIRFVGETVAKKLAKHFKSIDNLMAATFEE
LINVDEIGDRIAQSIVDFSNNLGNIQLINRLKTYGVQLEVSAESLENQSDKLQGQVFVVS
GVFHQMSRNELKKAIENNGGKVSSSISKKTNFIVAGDNMGPSKLAKAQDLSIPIISEQDF
IDKIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactgttttagaaagaatacaattattgcgtgaagaattaaataatcataattacaac
tattatgttttagacaatgccaccatttctgatttcgaatttgatatcaaactaaaagaa
ttagaaaagttagaagcagaaaacccagagtttttcgatataaactcgccaacacaaaga
gtaggaggagccattaccaaaaattttgaaacagtggtacacaaaaacagaatgtattct
ctagacaattcgtattcaaaagaagacttgttagattgggaaaaacgagtgcaaaaaggt
ttaggaagagaagatttagaatatacttgcgagctaaaattcgatggagcttccataaat
ttaacctacgaaaacgggaaatttattaaagctgtaactcgtggagacggttttcaagga
gacaatgttactgcaaacgtaaaaacaattcgttccattccattatcaatcaaaaaagat
tttgtgtcgaattttcaaatgcgtggcgaaattattttaccattagagggttttaataaa
atgaatgaagaacgagctgcaaatggagaagaagaatacaggaatccaagaaataccgca
agcggaagtttaaaattgcaagacagtgcagaggtcgcaaaaagacctttagattgttta
ctgtatcaagtagtaacagaagaacgtaagtacaaaacacatttcgagattttagaaaat
gccagaaaagttggctttaaagtgccaaaaacaattaagttagcaaaatcgattgacgaa
gttttcgagtttgtaaaccattgggataaaaaacgacacgatttgccttacgaaacagat
ggtgtagttgttaaagtaaataacttacagcagcaagaagagttaggttacacctcaaaa
gcaccaagatgggcaattgcgtataagtttaaagcagaacaagtagctacggttctaaat
aaaattacctatcaagtaggtagaacaggtgcaattacgccagtagcaaatttaaaacct
gttcaattagcaggcaccactgtaaaacgcgcctctttgcacaatgccgatcaaatcgaa
aagttagatatacgagaaggagacaccgtttttgttgaaaaaggaggggaaattatcccg
aaaattattgcagtagattttacaaaacgcccaacaaactctcaacccaccatttacgct
accaattgcccagaatgtaatacaaaattggttagaacacaaggagatgcaaaacactat
tgcccaaacgaatttggttgcgctcctcaaattaccgggcgaattcaacattttatcagc
agaaaagccatggatatcgatggcttaggaggagaaactgtagatttattacgtaaagtt
gggctaattcaaaattatgcagatttatacgacttaaaaatagaacaaatcattccgtta
gaaagaatggcagaaaaatctgctcaaaatttaattgccggaatcgaaaaatccaaaaaa
attccatttgaaaaagtattatttgcactaggcattcgttttgtaggagaaactgttgca
aaaaaattagcaaaacatttcaagtccatagacaatttaatggcagcaactttcgaagaa
ctcataaatgtagatgaaatcggagacagaatcgcacaaagtattgtcgatttttctaac
aatttaggcaatattcagctaataaaccgtttaaaaacctacggagttcaattagaagtt
tctgcagaaagtttagaaaatcaatccgataaattacaaggacaagtttttgtagtttca
ggcgtttttcatcaaatgagtagaaacgaactcaagaaagcaatcgaaaacaatggaggc
aaagtaagttcgtccatatctaaaaaaacaaattttatagttgctggcgataacatgggg
ccaagcaaacttgcaaaagcacaagatttaagcattccaataatttccgaacaagatttt
atagataaaatcagttaa
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