Pseudomonadaceae bacterium T75: OS670_01745
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Entry
OS670_01745 CDS
T08742
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbau
Pseudomonadaceae bacterium T75
Pathway
pbau03030
DNA replication
pbau03410
Base excision repair
pbau03420
Nucleotide excision repair
pbau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OS670_01745 (ligA)
03410 Base excision repair
OS670_01745 (ligA)
03420 Nucleotide excision repair
OS670_01745 (ligA)
03430 Mismatch repair
OS670_01745 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbau03032
]
OS670_01745 (ligA)
03400 DNA repair and recombination proteins [BR:
pbau03400
]
OS670_01745 (ligA)
Enzymes [BR:
pbau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OS670_01745 (ligA)
DNA replication proteins [BR:
pbau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OS670_01745 (ligA)
DNA repair and recombination proteins [BR:
pbau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OS670_01745 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OS670_01745 (ligA)
MMR (mismatch excision repair)
DNA ligase
OS670_01745 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OS670_01745 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WAD27063
LinkDB
All DBs
Position
368327..370693
Genome browser
AA seq
788 aa
AA seq
DB search
MPSAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFKELRALEAEHPELVTPES
PTQRVGGEALAAFGQVRHEVPMLSLGNAFEEQDLTDFDRRAREGLDLPAGDLFGDGAELE
YSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVLE
VRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVGR
SDGELADTHIGILQALKGWGLPISRELKLARGLAECREYFQAMGEKRDALPYEIDGVVFK
VNSIAQQRELGFRAREPRWAIAHKFPAREEITELLGVEFQVGRTGAITPVARLKPVQVAG
VTVSNATLHNMDEVARLGVMIGDTVIVRRAGDVIPQILGIIAERRPADARAVAVPESCPV
CGSAVERTQLIKRSKGRETVSEGSIYRCVGRLACQAQLKQAIIHFVSRRAMDIDGLGDKI
VEQLVDKELIRSPADLYCLTFEQVVALEGFAEVSSRNLLKSIEASRTPTLARFIYALGIP
DVGEETAKLLARALGSLERVARALPDVLVYLPDVGLEVAHEIHSFFQDAHNQQVIEQLLK
RGVQLQEEGDIHPEFAACATLAGLIDKLDIPFIARTGAQRLADRFGSLEAIIGADWLDLR
QVERLNEKAARALRDYFDVPENAQRARDVEAQLRDFGMHWQSERKSVEGLPLAGQTWVLT
GTLEAMSRDEAKVQLEALGAKVSGSVSARTSCVVAGPGAGSKLAKANELGLKVLDEPAFL
EQLAKLQA
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgcccaaaccgctgccgagcgcattgccgaactgcgcagcgaaatcgacgcc
cataactatcgctactacgtgctcgacgagcccagcgtgccggatgccgagtacgaccgg
ctgttcaaggagctgcgggcgctggaggccgagcatcccgagttggtcacccccgagtcg
cccacccagcgggtgggtggcgaagcgttggcggcctttggccaggtgcgtcacgaagtt
cccatgctcagcctcggcaatgcgttcgaggagcaggacctgaccgatttcgatcgccgg
gcgcgagaagggctggatctgccggccggcgacctgttcggtgatggcgccgaactggaa
tacagctgcgagccgaaactcgatggtctcgcggtgagcctgctctacgagaacggccat
ctggtgcggggcgccacgcgcggtgacggcagcacgggcgaagacatcagcgccaacgtg
cgcaccgtgcgcaacattccgctgaagctgcacggcagcggctggcccgcggtgctcgag
gtgcgcggcgaaatctacatgcccaaggccggcttcgaggcgttgaatgcgcgccagctg
gagagtggcggcaagcccttcgccaacccgcgcaatgcggcggccggcagcctgcgccag
ctggattcgaagatcaccgccagccgaccgctggaactctgcgcctacggtgtcggtcgc
agcgatggcgagctggccgatacacacatcggcattttgcaggcgctgaagggctgggga
ttgccgatcagccgcgagctgaagctggcccggggcctggccgagtgccgtgagtatttc
caggcgatgggagagaagcgcgacgcgctgccctacgaaatcgacggcgtggtgttcaag
gtcaattccatcgcgcagcagcgcgaactgggtttccgggcgcgcgagccgcgctgggcg
atcgcccacaagtttcccgcacgcgaggagatcaccgagctgctgggggtcgagttccag
gtcggacgcacgggagcgatcacgccggtggcgcggctcaaaccggtacaggtagccgga
gtgacggtatccaacgcgacgctgcacaacatggacgaggtggcgcgcctgggcgtgatg
atcggcgataccgtcatcgtgcgccgcgccggtgacgtgattccgcagatcctcggcatc
atcgccgaacggcgcccggccgatgcccgcgcggtagcggttccagaaagctgcccggtg
tgcgggtcggcggtcgagcgtactcagttgatcaagcgcagcaagggacgtgagacggtc
agcgaaggctcgatctatcgctgcgtcgggcgcctggcctgccaggcgcagctcaagcag
gcgatcatccatttcgtttcacgccgcgccatggatatcgacggcctcggcgacaagatc
gtcgagcagctggtggacaaggagctgattcgctcgccggccgatctctattgcctgact
ttcgagcaggtcgtcgcgctcgaaggcttcgccgaggtgtccagccgcaacctgctgaag
tccatcgaggcaagccggacgccgacgctggcgcgcttcatctatgcgctgggcatcccc
gatgtcggtgaggagaccgccaagctgctggctcgcgccctgggctcgctggagcgtgtg
gcacgtgcgttgcccgatgtgctggtctacctgcccgatgtcggcctggaagtcgcgcac
gaaatccacagcttctttcaggacgcgcacaatcagcaggtcattgaacaactgctcaag
cgcggcgttcagctgcaggaagagggcgatatccatcccgaattcgccgcctgcgcgacc
ctggccggcctgatcgacaaactcgacattcccttcatcgcccgcaccggcgcgcaacgc
ctggccgatcgcttcggcagcctggaggcgatcatcggtgccgactggctcgatctgcgc
caggtcgaacgcctcaacgagaaggccgcgcgtgccttgcgtgattatttcgacgttccc
gagaacgcccagcgcgcacgcgatgtggaagcccagctgcgggacttcggcatgcactgg
cagagcgagcgcaaatcggtcgaggggctgcctctggccggccagacctgggtgctcacc
gggaccctcgaggccatgagccgggacgaggcgaaagtgcagctggaggcgttgggcgcc
aaggtctccggctcggtatcggccaggaccagctgcgtggtggcggggccgggggcaggg
tccaagctggcgaaggccaacgagctggggctcaaggtcctggatgagccggcctttctc
gaacagctggccaagctgcaggcttga
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integrated database retrieval system
