Pseudomonas brassicacearum DF41: CD58_09455 Help Entry CD58_09455        CDS       T03174                                  Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pbc  Pseudomonas brassicacearum DF41 Pathway pbc03030   DNA replication pbc03410   Base excision repair pbc03420   Nucleotide excision repair pbc03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pbc00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     CD58_09455    03410 Base excision repair     CD58_09455    03420 Nucleotide excision repair     CD58_09455    03430 Mismatch repair     CD58_09455  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pbc03032]     CD58_09455    03400 DNA repair and recombination proteins [BR:pbc03400]     CD58_09455 Enzymes [BR:pbc01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      CD58_09455 DNA replication proteins [BR:pbc03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      CD58_09455 DNA repair and recombination proteins [BR:pbc03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      CD58_09455    NER (nucleotide excision repair)     GGR (global genome repair) factors      CD58_09455    MMR (mismatch excision repair)     DNA ligase      CD58_09455   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       CD58_09455 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT Nlig-Ia DNA_ligase_ZBD 5_3_exonuc PTCB-BRCT DUF4796_N Motif Other DBs NCBI-ProteinID:  AHL33110 LinkDB All DBs Position 2089830..2092193 Genome browser AA seq 787 aa AA seqDB search MNAVETRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPDLVTSDSPTQ RVGSVALSAFSQVRHEIPMLSLGNAFDEVTMREFDRRVTEGLDLPVGDLLGGGAAVEYSC EPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPPVLEVRG EVYMSKAGFERLNATQLEAGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGIGQVSA DIADTHIGNLKQLKAWGMPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNS IASQRELGFRAREPRWAIAHKFPATEELTELLDVEFQVGRTGAVTPVARLRPVKVAGVTV ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVITERRPDDARPVEVPKQCPVCGS HVERTQLIKRSKGRETISEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ LVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGIPDVG EETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAYEIHSFFEDPHNRQVIKDLLRHGL DIQDQGELGAEFSASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEAVMSADWLDMRQAL PEKQANAVREFFAIAANRQQAEAAEQQLRDFGMHWQSEKKVVEGLPEAGHTWVLTGSLEL MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKANELGVKVLDEEAFVGFLSR HGITVSS NT seq 2364 nt NT seq  +upstreamnt  +downstreamnt atgaacgccgtcgaaacccgcatccaacagctgcgcactgagttggatcagcataactac cgctaccacgtcctcgacgagccgagcattccggacgccgaatacgaccgcctgttccac gagctcaaggccctggaagagcagcatccggacttggtgaccagcgattccccgacccaa cgggtcggcagcgtggcactgtcggcgttcagccaggtgcggcacgagatcccgatgctc agcctgggcaacgccttcgacgaagtcactatgcgcgagttcgaccgccgggtaaccgaa ggcctcgacttgcctgtcggcgatctattgggcggtggcgcggcggtggaatacagctgc gagccgaagctcgatggcctggcggtcagcctgttgtaccaggatggcatgctggtgcgc ggtgccacgcgcggtgacggcaccaccggtgaggacatcagcgtcaatgtacgtaccgtg cgcaatatccccctcaagttgcagggcagcggttggccgccggtgctggaagtgcgcggc gaggtgtacatgtccaaggccggcttcgagcgcctcaacgccacgcaactggaggcgggc ggcaagaccttcgccaacccgcgtaacgcggcggccggcagcctgcgccagctggattcg aagatcaccgccaaccgcccgctggagttctgctgctacggcatcggccaggtgagcgcg gacattgccgatacgcacatcggcaatctcaagcagctcaaggcctggggcatgcccatc agccgtgagctgaaactggcccacggcatcgacgaatgcctggactactaccgcgacatc ggcgagcggcgcaacgcattgccttatgaaatcgacggtgtggtgttcaaggtcaacagc attgcctcccagcgtgaactgggctttcgcgcgcgcgagccgcgttgggccatcgcccat aaattcccggccaccgaagaactcaccgagttgctcgacgtcgagttccaggtcggccgc accggggccgtcacgcccgtggcacgactcaggccggtgaaagttgccggcgtgaccgtg gccaacgccacactgcacaacatggacgaagtggcgcgcctgggcctgatgatcggcgat accgtgattatccgccgtgccggtgacgtaattccgcaagtggtgcaagtgatcaccgag cgccgcccggacgatgcccgtccggtcgaggtccccaaacagtgcccggtctgcggctcc catgtcgagcgcacgcagttgatcaagcgcagcaagggccgcgagaccatcagcgaaggc gcggtgtaccgctgcgtcggtcgcctggcctgtggcgcgcaactcaagcaggcgatcatt cattttgtgtcgcgtcgggccatggacatcgaggggctgggcgagaagagcgtcgagcaa ctggtggacgagggcctggtgggctcgcccgccgatctgtatgccctgacgttcgagcaa gtggtcgacctggaaggtttcgccgaactgtcgagcaagaacctgctggccgccatcgtc gacagcaagaagccgagcctggcgcgcttcatctatgccctcggcattccggacgtgggc gaggaaaccgccaaggtcctggcccgctccctcggttcgctggagcgcgtgcaggcggct ttgccccaagtgctcacgtatctgccggatgtcggcctggaagtggcctacgagattcac agcttctttgaagacccgcacaaccgccaggtgatcaaggacctgctgcgccacggcctc gatatccaggaccagggcgagttgggcgccgaattttccgccagcacgacgctgggcggt tttctcgacaagctgcacattccgtcggtcgggccgggtggggcgcagaaactggcggac aagttcggctccctcgaagcggtaatgagcgccgactggctggacatgcgccaggcgttg ccagaaaaacaggccaacgccgtgcgcgagttcttcgccatcgccgccaatcgccaacag gccgaggctgcggagcagcagctgcgggacttcggcatgcattggcaaagcgagaaaaaa gtcgtcgaaggcctgcccgaagcgggacacacctgggtgttgaccggctcgctggagttg atgagccgcgatgtcgccaaggacaagctggaaagcctgggggccaaggtggccggttcg gtgtcagcgaaaacccattgcgtcgtggccgggccgggtgcgggttcgaagttggccaag gcgaatgagttgggggtgaaggtactggatgaagaggcctttgtcggttttttgagtagg cacggcatcacggtttcgtcgtga

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