Plasmodium berghei: PBANKA_1010800
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Entry
PBANKA_1010800 CDS
T01111
Name
(RefSeq) CCR4-associated factor 16, putative
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
pbe
Plasmodium berghei
Pathway
pbe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pbe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PBANKA_1010800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pbe03019
]
PBANKA_1010800
Messenger RNA biogenesis [BR:
pbe03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PBANKA_1010800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
SMC_N
AAA_21
RsgA_GTPase
AAA_29
Arf
AAA_23
Septin
AAA_18
Dynamin_N
AAA_15
MMR_HSR1
AAA_7
ATP-synt_ab
AAA_22
Zeta_toxin
ANT
AAA_25
AAA_33
nSTAND3
Motif
Other DBs
NCBI-GeneID:
55150029
NCBI-ProteinID:
XP_034421908
UniProt:
A0A509AJJ9
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Position
10:495037..496551
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AA seq
257 aa
AA seq
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MDSIIINNLTYNYYHPLRKTRIQALSDLNLVFEKGMRILVCGKNGAGKSTLLSILAGKKL
VKEESVSVFNKPVFHDLSLNDRIGYVGEWWNDEYAMNITIKSMFAQYADSKRYKKLMKLF
DIDDSKVISGISKGQKKKVQIVSTIIKRKDIYIFDEAAESLDLISRKVLLDFLKNESIKY
KCIIIYSTHIFDCMDKWSTHVLYLAKGSISFFSDINSIVSDNKYISMADFVFDNMMDETN
KNDKTYNIEEILNLDSE
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atggatagcatcataattaacaacttaacttataattattatcacccactacgaaaaaca
cgaattcaggctctaagcgatttaaaccttgtatttgaaaagggtatgcgaattcttgtt
tgtggaaaaaatggagctggaaaaagtaccttattaagcattttagctggaaaaaagctt
gtaaaagaggaatctgtttcagtttttaataaaccagttttccacgacctttcattaaac
gatagaataggatatgttggagaatggtggaatgatgaatatgccatgaacatcacaatt
aaaagcatgtttgctcaatatgctgattcgaagagatataaaaaattaatgaaattgttt
gacatagatgatagtaaagttatatctggtatttctaagggacagaaaaaaaaagttcaa
attgtatctactataattaaaagaaaagatatttatatttttgatgaagcagcagaatcc
ttagatttaatatctagaaaagttttactcgattttttgaaaaatgaatctattaaatac
aagtgtattataatttattcaactcacatatttgattgtatggacaaatggtctacccat
gttttatatttggcaaaagggtcaatatcttttttttcagatataaacagtattgtaagt
gataacaaatacatttcaatggctgattttgtttttgacaatatgatggatgagacaaac
aaaaatgataaaacttacaatattgaagaaattttgaatctagattctgaatag
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