Pseudomonas beijingensis: PSH84_13735
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Entry
PSH84_13735 CDS
T10327
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbej Pseudomonas beijingensis
Pathway
pbej03030
DNA replication
pbej03410
Base excision repair
pbej03420
Nucleotide excision repair
pbej03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSH84_13735 (ligA)
03410 Base excision repair
PSH84_13735 (ligA)
03420 Nucleotide excision repair
PSH84_13735 (ligA)
03430 Mismatch repair
PSH84_13735 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbej03032
]
PSH84_13735 (ligA)
03400 DNA repair and recombination proteins [BR:
pbej03400
]
PSH84_13735 (ligA)
Enzymes [BR:
pbej01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSH84_13735 (ligA)
DNA replication proteins [BR:
pbej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSH84_13735 (ligA)
DNA repair and recombination proteins [BR:
pbej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSH84_13735 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSH84_13735 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSH84_13735 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSH84_13735 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WLI47828
LinkDB
All DBs
Position
3041043..3043400
Genome browser
AA seq
785 aa
AA seq
DB search
MNAVESRIQQLRTELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEEQHPELVTSDSPTQ
RVGSVALSAFSQVRHEIPMLSLGNAFDETTMREFDRRVTEGLDLPMGDLLGGGAAVEYSC
EPKLDGLAVSLLYQDGMLVRGATRGDGTTGEDISVNVRTVRNIPLKLQGTGWPPLLEVRG
EVYMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSRITANRPLEFCCYGIGQVTS
DIADTHIGNLKQLKAWGMPISRELKLAHGIDECLDYYRDIGERRNALPYEIDGVVFKVNS
IASQRELGFRAREPRWAIAHKFPATEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTV
ANATLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVQVVTERRPENARPVEVPQQCPVCGS
HVERTQLIKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQ
LVDEGLVGSPADLYALTFEQVVDLEGFAELSSKNLLAAIVDSKKPSLARFIYALGIPDVG
EETAKVLARSLGSLERVQAALPQVLTYLPDVGLEVAHEIHSFFEDPHNRQVIKDLLRHGL
EIQDQGELGAEFSASTTLGGFLDKLHIPSVGPGGAQKLADKFGSLEGVMSADWLDMRQAL
PEKQANAVREFFAIAANRQQAEAAEQQLRDFGMHWQSERKVVEGLPEAGHTWVLTGSLEL
MSRDVAKDKLESLGAKVAGSVSAKTHCVVAGPGAGSKLTKANELGLKVLDEQAFVDFLTG
HGVAL
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccgtcgaatcccgcatccaacagctgcgcaccgagctggaccagcacaactac
cgttaccacgtcctcgatgaaccgagcatcccggacgccgagtacgaccgtctgttccac
gagctcaaggccctggaagagcagcacccggaactggtcaccagcgattccccgacccag
cgggtcggcagcgtggcgctgtcggcgttcagccaggtgcgccatgagatcccgatgctc
agcctgggcaacgccttcgatgaaaccaccatgcgtgaattcgaccgccgggtgacggaa
ggtctcgacctgcccatgggcgatttgctgggtggtggcgcggcggtggaatacagctgc
gagccgaagctcgatggcctggcggtcagcctgttgtatcaggacggcatgctggtgcgt
ggtgccacccgcggtgacggcaccacgggcgaggacatcagcgtcaatgtgcgcaccgtg
cgcaacattcccctcaagttgcaaggcactggttggccaccgctgttggaagtgcgcggc
gaggtgtacatgtccaaggccggcttcgagcgtctcaacgccacgcagttggaggtgggc
ggcaagacgtttgccaacccgcgcaacgcggcggccggcagcctgcgtcagctcgattcc
aggatcacggccaaccgtcccctggagttctgttgctacggcatcggccaggtgacgtcg
gacatcgccgacacccatatcggcaatctcaagcaactcaaggcctggggcatgcccatc
agccgtgagttgaagctggcccacggcatcgatgaatgcctggattactaccgtgacatc
ggcgagcgacgcaacgcgctgccctacgagatcgacggtgtggtgttcaaggtcaacagc
atcgcctcgcagcgcgagctcggtttccgcgctcgggaaccgcgttgggccatcgcccac
aagtttcccgccactgaagaactcaccgagttgctcgacgtcgagttccaggtcggccgc
acgggggcggtgacccctgtggcccgtctcaaaccggtaaaagtcgctggcgtgaccgtg
gccaacgccaccttgcacaacatggacgaagtggcgcgcctgggcgtgatgatcggcgac
acggtgatcatccgtcgcgccggggatgtgatcccgcaggtggtgcaggtcgtcaccgag
cgccgcccggaaaacgcccgcccggtggaagtaccccagcaatgcccggtctgcggctcc
cacgtcgagcgcacgcaattgatcaaacgcagcaagggccgtgaaaccgtcagcgaaggt
gcggtgtaccgctgcgttggtcgcctggcctgtggcgcgcagctcaagcaggcgattatc
catttcgtctcgcgtcgggccatggacatcgaaggcctgggcgagaagagcgtcgagcaa
ctggtggatgaggggttggtgggttcgcctgccgatctgtatgccctgaccttcgagcag
gtggtcgacctggaaggcttcgccgaactgtcgagcaagaacctgctggccgccatcgtc
gacagcaaaaaaccgagcctggcgcgtttcatctatgcccttggcatcccggacgtgggc
gaggagaccgccaaggtcctggcccgctccctcggttcgctggagcgcgtgcaggcggcg
ttgccccaggtgctcacgtacttgcctgacgtcggcctggaagtcgcccacgagatccac
agcttcttcgaagacccgcacaaccgacaggtgatcaaggacctgctgcgtcacggtctt
gagatccaggatcagggcgaactgggcgccgagttctccgccagcactaccctgggcggc
tttctcgacaagctgcacattccttcggtcggaccgggcggggcgcagaaactggcggac
aagttcggctccctcgaaggggtgatgagcgccgactggctggacatgcgccaggcgctg
ccggaaaagcaggccaacgccgtacgcgagtttttcgccattgctgccaaccgtcagcag
gccgaagcagcggaacaacagttgcgcgatttcggtatgcattggcaaagcgagaggaaa
gtcgtcgaaggcttgcccgaagcagggcacacctgggtgctgaccggttcgctggagctg
atgagtcgcgacgttgccaaggacaagctggagagcctgggggcgaaggtcgccggttcc
gtgtcggcgaaaacccattgtgtggtggccgggccgggggcgggttcgaaactgaccaag
gccaatgagctggggctcaaggtgctggatgagcaagcctttgtcgatttcctgacaggg
catggcgtcgcactctga
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