Pseudomonas benzenivorans: SBP02_09285
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Entry
SBP02_09285 CDS
T10569
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbez Pseudomonas benzenivorans
Pathway
pbez03030
DNA replication
pbez03410
Base excision repair
pbez03420
Nucleotide excision repair
pbez03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SBP02_09285 (ligA)
03410 Base excision repair
SBP02_09285 (ligA)
03420 Nucleotide excision repair
SBP02_09285 (ligA)
03430 Mismatch repair
SBP02_09285 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbez03032
]
SBP02_09285 (ligA)
03400 DNA repair and recombination proteins [BR:
pbez03400
]
SBP02_09285 (ligA)
Enzymes [BR:
pbez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SBP02_09285 (ligA)
DNA replication proteins [BR:
pbez03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SBP02_09285 (ligA)
DNA repair and recombination proteins [BR:
pbez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SBP02_09285 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SBP02_09285 (ligA)
MMR (mismatch excision repair)
DNA ligase
SBP02_09285 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SBP02_09285 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WPC06923
LinkDB
All DBs
Position
2047872..2050265
Genome browser
AA seq
797 aa
AA seq
DB search
MTDAAPSAQSAAKRIAQLRSELDEHNYRYHVLDEPSIPDAEYDRLYHELKALEAEHPELI
TPDSPTQRVGSLALSAFGEVRHEVPMLSLGNAFEEGDLLDFDRRVREGLDLPAGDHSGDL
FAEGVDVEYSCEPKLDGLAVSLLYERGQLVRGATRGDGSTGEDISANVRTIRNIPLRLHG
SGWPEVLEVRGEVFMSKAGFEALNARQAESGGKTFANPRNAAAGSLRQLDPKITASRPLE
LCAYGIGRVEGELPQTHIGILQALKGWGLPISRELKLAKGAQQCLDYYRAIGERRETLPY
EIDGVVFKVNSLASQRELGFRAREPRWAIAHKFPAMEELTELLAVEFQVGRTGAVTPVAR
LQPVKVAGVTVSNATLHNMDEVARLGLMVGDTVIIRRAGDVIPQVVQVVRERRPADARAV
QVPEQCPVCGSRVERTQLVKRSKGRETLSEGAVYRCVGRLACAAQLKQAIIHFVSRRAMD
IEGLGEKSVEQLVDEGLVRSPADLYSLTFEQIVGLEGFAELSSNNLLAAIADSRTPSLAR
FIYALGIPDVGEETAKLLARALGSLARIQRALPEVLTYLPDVGLEVAHEIRNFFADGHNQ
QVIRDLLARGIALQEEGELGAEFAACATLEGLLDKLNIAGIAATGARKLAEKGGSLDGVI
ALSQDWLELSVMKGLNEKAKQALREHFAVPANVERARTIEAQLREFGMHWQSERKAVEGL
PLAGQTWVLTGSLEVMSRDVAKDKLESLGAKVAGSVSAKTTCVVAGPGAGSKLAKAQELG
LRVLDEAEFLAELSRLG
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgccgccccctccgcccagagtgccgccaaacgcatcgcccagttgcgcagc
gagctggatgagcacaactaccgctaccacgtgctcgacgagccgagcattccggatgcc
gagtacgaccgcctttaccatgagctcaaggccctggaggccgaacaccccgagctgatc
accccggactcaccgacccagcgggtcggcagcctggcgctcagtgccttcggcgaggtc
cggcacgaggtgccgatgctcagtctcggcaacgccttcgaggaaggcgacctgctggat
ttcgaccgccgcgtgcgggaggggctggatctgccggccggcgaccatagcggggacctg
ttcgccgaaggcgtcgacgtggagtacagctgcgaacccaagctggacggcctggccgtc
agcctgctgtacgagcgggggcagttggtccgcggtgccacccgcggcgacggcagcacc
ggcgaggacatcagcgccaacgtgcgcaccatacgcaacatcccgctgcgcctgcacggc
agcggttggcccgaagtgctcgaggtacgcggcgaggtgttcatgtccaaggccggtttc
gaggccttgaatgcgcgccaggcggagagtggcggcaagaccttcgccaacccgcgcaat
gccgcggccggcagcctgcgccaactggacccgaagatcaccgccagtcgcccgctggag
ctgtgcgcctacggcatcggccgggtcgagggcgaactgccgcagacccatatcggcatc
ctccaggcgctcaagggctggggcctgccgatcagccgtgagctgaagctggccaagggc
gcacagcagtgcctggactactaccgcgccataggcgagcgccgcgagacgctgccctat
gaaatcgacggcgtggtgttcaaggtcaacagcctggcctctcagcgcgagctgggtttt
cgcgcccgcgagccgcgttgggcgatcgcccacaagttcccggcgatggaggagctgacc
gagctgctcgccgtcgagtttcaggtcgggcgcaccggggcggtgaccccggtggcgcgc
ctgcagccggtgaaggtggccggcgtcacggtgtccaatgcgaccctgcacaacatggac
gaggtggcgcgattggggctgatggtcggcgatacggtgatcatccgccgcgccggcgac
gtgattccccaggtggtgcaggtggtgcgcgagcgccgcccggccgatgcccgtgccgtg
caggtgcccgagcagtgcccggtgtgtggctcgcgggtcgagcgcacccagctggtcaag
cgcagcaaggggcgggagaccctcagcgagggggcggtgtaccgttgtgtcggccgcctg
gcctgcgctgcccagctcaagcaggcgatcatccatttcgtctcgcgccgcgccatggac
atcgagggcctcggcgagaaaagcgtcgagcagctggtcgacgagggcctggtgcgctcg
ccggcggatctctacagcctgaccttcgagcagatcgtcggcttggagggcttcgccgag
ctgtcgagcaacaacctgctggccgccatcgccgacagccgcacgccgagcctggcgcgt
ttcatctacgccctgggcatccccgatgtcggcgaggaaaccgctaagttgttggcccgt
gccctgggctcgctcgcgcgcatccagcgggcgctgccggaggtgctgacctacctgccg
gatgtcggcctggaggtcgcccacgagattcgcaacttcttcgccgacggccacaaccag
caggtgatccgcgacctgctggcccgtggcatcgccttgcaggaggagggcgagctcggc
gccgagttcgccgcctgcgccacattggaggggctgctcgacaagctgaatatcgccggc
atcgccgccaccggggcgaggaagctggccgagaagggcggtagcctcgacggtgtgatc
gccctcagtcaggactggctggagctgagcgtgatgaaggggctcaacgagaaggccaag
caggccctgcgcgagcacttcgcggtgccggccaacgttgagcgggcccggacgatcgag
gcgcagctgcgtgagttcggcatgcactggcagagcgagcgcaaggccgtggaggggctg
cccctggccgggcagacctgggtcctgaccggtagcctagaggtcatgagccgcgacgtc
gccaaggacaaactggaaagcctgggcgccaaggtggccggctcggtgtcggccaagacc
acctgcgtggtggccgggccgggggccggctcgaagctggccaaggcccaggaactgggg
ctgcgggtgctggacgaggcggagtttcttgcggagctgagccgcctgggctag
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