Candidatus Promineifilum breve: CFX0092_A0291
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Entry
CFX0092_A0291 CDS
T05438
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbf
Candidatus Promineifilum breve
Pathway
pbf03030
DNA replication
pbf03410
Base excision repair
pbf03420
Nucleotide excision repair
pbf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFX0092_A0291 (ligA)
03410 Base excision repair
CFX0092_A0291 (ligA)
03420 Nucleotide excision repair
CFX0092_A0291 (ligA)
03430 Mismatch repair
CFX0092_A0291 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbf03032
]
CFX0092_A0291 (ligA)
03400 DNA repair and recombination proteins [BR:
pbf03400
]
CFX0092_A0291 (ligA)
Enzymes [BR:
pbf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFX0092_A0291 (ligA)
DNA replication proteins [BR:
pbf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFX0092_A0291 (ligA)
DNA repair and recombination proteins [BR:
pbf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFX0092_A0291 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFX0092_A0291 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFX0092_A0291 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFX0092_A0291 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
DUF6982
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
CUS02172
UniProt:
A0A160SYW0
LinkDB
All DBs
Position
I:333327..335363
Genome browser
AA seq
678 aa
AA seq
DB search
MTPEERLNELRIVINYHLYRYHVLDTPVISDAEYDALYLQLQEIESQHPALITPDSPTQR
AGAPPSAAFTKVVHPTPILSLMNAFNPDDLRAWRARIGRLLLPDTHLTYVVEPKLDGLTV
VLTYRDGRFVQGATRGDGAVGEDVTPNLRTLRSIPKFVPVAPDSALKPPAYLVVRGEVFL
PLDKFEALNAERAAAGEAIYMNPRNTAAGSLRQLDPAKTAERPLRLYCYDIVAAEGIVLP
ATQWERLAYLKELGFPVSPDNRLCAGLEEVVAVYEAWIARRNQINYEVDGVVVKVNDRRI
ADELGFAGKDPRGAIAMKFAAQEKTTRLIDVQVNVGRTGVLAPNAVLEPVEIGGTMVRNA
TLHNYDEIARKDIRIGDRVLVKRAGDVIPYVVGPIVDARDGSERPIERPAVCPVCGQPIV
QLPDEVALYCENAACPEQLIRRVEYFVSRGAMDITSFGSQTAALLFEQGLIHDVADIYTV
QRDDLLGLEGYKEKKVDNLLAGIVASKQQPPERLLTALGVRFVGGVVASLLIDALGGIDA
IAAADEAELQAISGIGPQTALSVVAWFANERNRELVEKLRAAGLRLTAERKAATTDSQTL
IGQIFVITGTLPTMSREAATALIETHGGKVTGSVSAKTNYLLAGEAAGSKLAKAQQLGVP
VIDEAALTALIAGGPPSA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacaccggaagaacggctcaatgaacttcgcatagtaattaattatcacctttaccgt
taccacgtcctcgatacgccggtgatcagcgacgcggaatacgatgccctttacctccaa
cttcaggaaatcgagagccaacaccccgcactcatcacccccgattcgcccacccagcgg
gcgggcgcgccgccgtcggccgcctttaccaaggtcgttcatcccacgccgatattgagc
ctgatgaacgccttcaaccccgatgatctgcgggcctggcgggcgcgcatcggtcgcttg
ttgctgcccgacacccatctgacctacgtggtcgagccgaagctggacgggctgaccgtg
gtgctgacctatcgcgacgggcgcttcgtccagggggcgacgcggggcgatggggcggtg
ggcgaggacgtgacgccgaacctgcgcacgctgcgctccatccccaagtttgtgcccgtc
gccccggatagcgcgctgaagccgccggcctatctggtggtgcgcggcgaggtgttcctg
ccgctggacaagttcgaggcgctcaacgccgagcgggccgcggccggcgaggcgatctat
atgaacccgcgcaacacggccgccggttccctgcgccagcttgacccggccaaaacggcc
gagcggccattgcggctctactgttacgacatcgtcgccgccgaagggatcgttctgccc
gccacccagtgggaacggctggcttatctgaaggaactgggctttcccgtctcgcccgac
aaccggctgtgtgccgggctggaagaggtggtggccgtctatgaggcgtggatcgcccgg
cgcaaccagatcaattacgaggtcgatggtgtggtggtgaaggtcaacgaccgccgcatc
gccgatgagttgggcttcgccggcaaagacccgcgcggggccattgccatgaaattcgcc
gcccaggagaagacgacgcggttgatcgacgtgcaggtcaacgtcggccgcaccggcgtg
ttggcccccaatgccgtcctggagccggtcgagatcggcggcacgatggtgcgcaacgcc
acgctccacaactacgacgagatcgcgcgcaaggatattcgcatcggcgaccgggtgctg
gtcaagcgcgccggcgacgtcatcccctacgtggtggggccaattgtcgatgcccgcgac
ggcagcgagcggcccattgagcggccggccgtttgcccggtttgcggccagccgattgtc
cagttgccggacgaagtggccctctattgcgagaacgccgcctgcccggagcaactcatt
cgccgcgtggaatacttcgtcagtcgcggcgcgatggacatcaccagcttcggcagccag
acggcggcgctgctctttgaacagggcctgatccacgacgtggccgacatctacacggtg
cagcgtgacgatttgctgggtctggaggggtacaaagagaagaaggtcgataatctcctg
gccgggattgtcgccagcaagcaacagccgcccgagcgcctgctgaccgcgctgggcgtc
cgcttcgtgggcggcgtggtggcctcgctgctgatcgatgccctgggcggcatcgacgcc
atcgccgccgccgatgaggccgagctacaggccattagcggcatcggcccgcaaacggcc
ctttcggtggtggcctggttcgccaatgagcgcaaccgggagctggtcgaaaaattgcgc
gccgccggcttgcgtctgaccgccgagcgtaaagccgccacgaccgactcgcagacgttg
atcggccagattttcgtgatcaccggcacgctgcccaccatgtcccgcgaggcggcgacg
gcgctaatcgaaacccacggcggcaaggtgaccggctcggtgagcgccaaaacgaactat
ctgctggcgggcgaggcggcgggcagcaaactggccaaagcgcaacaactgggcgtgccg
gtcatcgacgaggcggccctcaccgctttaatcgccggcggcccgccctcggcctga
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