Prevotella bivia: QP022_05240
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Entry
QP022_05240 CDS
T09089
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbiv
Prevotella bivia
Pathway
pbiv03030
DNA replication
pbiv03410
Base excision repair
pbiv03420
Nucleotide excision repair
pbiv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbiv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QP022_05240 (ligA)
03410 Base excision repair
QP022_05240 (ligA)
03420 Nucleotide excision repair
QP022_05240 (ligA)
03430 Mismatch repair
QP022_05240 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbiv03032
]
QP022_05240 (ligA)
03400 DNA repair and recombination proteins [BR:
pbiv03400
]
QP022_05240 (ligA)
Enzymes [BR:
pbiv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QP022_05240 (ligA)
DNA replication proteins [BR:
pbiv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QP022_05240 (ligA)
DNA repair and recombination proteins [BR:
pbiv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QP022_05240 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QP022_05240 (ligA)
MMR (mismatch excision repair)
DNA ligase
QP022_05240 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QP022_05240 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
PTCB-BRCT
HHH_2
BRCT_2
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
WIL17656
LinkDB
All DBs
Position
1:complement(1193302..1195338)
Genome browser
AA seq
678 aa
AA seq
DB search
MAEDKHKIMEALVLQLNEASDAYYNGKGEAMTDFEWDAAFDRLKALEEELGEVLPNSPTN
SVSADKLKGQKEVHEYPALSLAKTKSETELAKWAEERPIWLSWKLDGLTLVVTYDNGKLT
KVVTRGNGHIGTNITHLAAAIDNILPTVKANGHIVIRGEAVISYADFEQFNLESEEEYAN
PRNLASGSLTLKDINEVKARHLRWIPFSLVHTDEEIISWGDRMAFLDKLGFNTVERELIT
LPTAENIEKVIATWTLRVTDTTRKDKQPYPVDGLVITYDDTEYAATGSVTGHHATRAGFA
FKWQDESVETALEYIEWSCATSTISPVAVFKPVELEGTTVKRASLCNISECERLGIGDAG
TKLMVIKANKIIPKVISVTECLGSFTIPTTCPVCHQPTQIVESEASGTRTLHCTNHHCPA
KQLKKFARFVSKEGINIDGLSEQTVQKFINLGWVSEYADLFHLQEKAEALKYMEGFGEKS
CDNLLTAIEKARKVEAKQLLFALSIPLVGKDVCTRLLSAYPLEELINKSRENIVAPTLQR
SLFEEPRPNNEEIFSTIDGIGPEKSASFVGWMQDDSNYAQLQRLLQELTVSQTSSEPKGN
LCQGLTFVITGDVHHYKNRNELKAYIESEGGKVTGSVSKSTHYLINNDVKSTSGKNKKAK
ELNIPILSEDDFMANFSN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagataaacataaaataatggaagcactcgtcctgcaactgaatgaagcttct
gatgcttattataatggtaagggcgaagccatgaccgattttgaatgggatgcagccttc
gaccgcctcaaggctcttgaagaagaacttggagaggttcttccaaactcccctaccaat
agtgttagtgcagacaaactcaaagggcagaaagaggtacatgaatatccggctctctca
ctagccaaaacaaagagtgagacagagctagcaaagtgggcagaagaacgtcctatttgg
ctttcatggaagctagatggcttaacattggtcgtaacttacgataatggtaaactgaca
aaagtagtaacacgtggcaatggacacattggtactaatattactcatttagctgctgct
attgataatatcttacctacggtaaaagctaacggacacattgttatccgtggagaagcc
gtaataagctatgccgacttcgaacaattcaaccttgagtcggaagaggaatatgccaac
cctcgtaatctagcttcaggatcgctcacactaaaggatatcaacgaggtaaaagcacgt
catctgcgctggatacctttctcgcttgtacacaccgatgaggagattatctcgtggggc
gatcgaatggctttccttgacaaattaggctttaacacggtagaacgcgaacttattact
ctaccaacggcagaaaacattgagaaagtaatcgcaacttggacactccgcgttaccgac
actactcgaaaagacaaacagccctaccctgttgatggcttagtgataacctatgacgac
accgaatatgctgcgacaggatcggtaacgggacaccatgccacacgtgcaggctttgcc
tttaaatggcaagatgaaagcgtagagacggcattggaatatatagaatggtcgtgtgcc
acctctacaatatcgccagtggctgtgttcaagcctgtagagctagaaggcaccaccgta
aaacgtgctagcctctgcaatatttctgaatgcgaacgactcggtattggtgatgctggc
acaaagctcatggtgattaaagccaataagattatccccaaagtgatcagtgttaccgag
tgtttgggcagttttaccatacctacaacatgtcccgtttgtcatcaacccacccaaatc
gttgagagcgaggctagtggaacgcgcaccctccactgtaccaaccaccattgtccagcc
aaacaactcaagaagtttgcgcgctttgtatcgaaagaaggtatcaacattgatggtctg
tctgagcaaactgtacagaagtttatcaatcttggttgggtatccgagtatgccgatctt
tttcatctacaagaaaaagctgaggcgctaaagtacatggaaggctttggcgagaagagt
tgcgacaatcttcttacagctatagagaaagcacgtaaagtggaagctaaacagttactt
ttcgctttaagcatacctttagtaggtaaagatgtatgtacacgcttgctttcagcttat
cctttagaggaattaatcaataagagtcgtgaaaacatagtcgcacccacccttcaaagg
tcattattcgaagagccaagaccaaacaatgaggaaatattctccacaatagatggtatt
ggaccagaaaagagtgctagctttgtaggctggatgcaagacgatagcaactacgcacaa
ctacaacgcctcttgcaagaactcactgttagtcaaacttcatcagagccaaaaggcaac
ctatgtcaaggcttaacctttgtcattacaggtgatgttcatcattataaaaaccgtaat
gagttaaaggcttatattgagagcgaaggtggtaaggtaacgggaagtgtatcgaaaagc
acccattaccttatcaataatgatgtgaaaagcacttctgggaaaaataagaaagcaaag
gaactaaacatcccgatcctatctgaggatgattttatggctaattttagcaactag
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