Parvularcula bermudensis: PB2503_09139
Help
Entry
PB2503_09139 CDS
T01298
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbr
Parvularcula bermudensis
Pathway
pbr03030
DNA replication
pbr03410
Base excision repair
pbr03420
Nucleotide excision repair
pbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PB2503_09139
03410 Base excision repair
PB2503_09139
03420 Nucleotide excision repair
PB2503_09139
03430 Mismatch repair
PB2503_09139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbr03032
]
PB2503_09139
03400 DNA repair and recombination proteins [BR:
pbr03400
]
PB2503_09139
Enzymes [BR:
pbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PB2503_09139
DNA replication proteins [BR:
pbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PB2503_09139
DNA repair and recombination proteins [BR:
pbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PB2503_09139
NER (nucleotide excision repair)
GGR (global genome repair) factors
PB2503_09139
MMR (mismatch excision repair)
DNA ligase
PB2503_09139
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PB2503_09139
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
YiiM_3-alpha
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
ADM09881
UniProt:
E0TCU2
LinkDB
All DBs
Position
1822682..1824865
Genome browser
AA seq
727 aa
AA seq
DB search
MTDPTLPEELSEAEAADELARLAHEMAAADIAYENADPVMTDAAYDALRRRNEAIEARFP
HLRRADSPSLRVGTAPSGRFAKVRHALPMLSLDNAFADEDVDEFVTRVRRFLRLGEEEPL
RLTAEPKIDGLSANLRYEEGKFVLGTTRGDGTVGEDITRNLATIENIPARLEGAPSILEV
RGEVYLGKEAFAAMNDAFAARGEKVFANPRNAAAGSLRQKDPSITADRPLRFFAYAWGEV
SSPLGETQTEAVKRLSDLGFCTNELMGTFATAKEAIAHYRHIETLRAALDYDVDGVVYKV
DRLDWQERLGAVSRSPRWAIAHKFSAEKAETVLERIDIQVGRTGALTPTARLRPVTVGGV
VVSNATLHNEDEIARLDVREGDSVCVQRAGDVIPQILSVLTEKRPKEAQPYRFPTHCPVC
GSEAVRELNEKTGERDVVRRCTGGLICPAQGIERLKHFVSRKAMDIDGLGARQIEDFYGR
HMIAEPADIFTLPARYHQGTFDVIGTSDLNSYKRLAPTATKPARWTKEITNRKSLDNLFA
AIEAARSRPLGRVIFALGIRHIGEMNGRLIAQGVETLSGFCRLGDRLAKGDEAARQEMLA
IDGIGDTVTDALAAFFHEPRNREALDRLAAEISPAAPPKPAQDSRFSGKTVVFTGKLERM
SRDEAKARATSLGAKVSGSISAKTDYLVAGPGAGSKLTKAKDLGVDILTEDEWLEFISDE
AVSVQLE
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatccaacgctgcccgaagaattgtccgaggctgaggctgcggatgaactcgcc
cgactggcgcatgaaatggcggctgccgacatcgcctatgagaacgccgatccggtgatg
accgacgccgcctatgacgcccttcgccgccgcaatgaggcgatcgaggcacggtttccg
catttgcgtcgggcggacagcccctcgctcagggtcgggaccgcccccagcggcagattt
gccaaggtgcgccatgcgctcccaatgttgagtctggataatgcgtttgcggatgaagat
gtcgatgaatttgttacgcgagttcgacgatttttgcggcttggcgaggaagaaccctta
aggctgacggctgagcccaaaattgacggtctgtccgctaatcttcggtatgaggaggga
aagttcgttcttgggacgacgcgcggggacggaacggtcggggaggatattacccgcaat
cttgcgacgattgagaatattcccgcccgtcttgagggggctccatcgattctcgaggtc
agaggcgaggtatatttgggtaaagaggccttcgcagcgatgaatgacgcctttgcggcc
aggggcgaaaaggtgtttgccaatccccgcaatgcggctgccgggtccttgcgtcaaaag
gatccgtcgatcaccgccgatcgccctttacgatttttcgcctatgcatggggggaggtg
tcctctcccctcggcgagacccagaccgaggcggtgaagcgtctttccgaccttggtttt
tgcaccaatgaattgatgggcacctttgcgacggccaaggaggccatcgcgcattatcgt
catatcgaaacgctgcgcgccgcgctcgattacgatgtcgatggggtcgtctacaaggtt
gatcgcctcgattggcaagaacggcttggcgccgtcagccgctcaccgcgatgggcaatc
gcccacaaattcagtgcggagaaggctgaaacggttctcgagcgaatcgatattcaggtt
ggtcggacaggcgccctgacccctacggcacgtctacgtccggtgaccgtcggcggcgtt
gtcgtctcgaatgcgaccttgcacaatgaagacgagattgcccggctcgatgtccgggag
ggggattcggtttgtgtccagcgggcaggggatgtcatcccccaaattctctcggttctg
acggaaaagcgaccgaaggaggcacagccctatcggtttcccacccattgtcccgtctgt
ggctctgaagccgtgcgtgaactgaacgaaaaaacgggtgaacgggatgtcgtgcgccgc
tgtacgggcggccttatctgtccggcgcaggggatcgagcgactcaagcatttcgtaagt
cggaaagcgatggatatcgacgggcttggcgcccgacagattgaggatttttatgggcgg
catatgattgccgagcccgcggacatcttcacgctgccggcgcgttatcatcagggcacg
ttcgatgtgatcggcacctcggatttgaacagctataaacgcctggcccccaccgcgaca
aagccggcaaggtggaccaaggagatcacgaaccgaaaatctctcgacaatctgttcgcc
gccatcgaggccgcgcgatcacggccccttggccgggtcatcttcgccctcgggattcgg
catatcggagagatgaacgggcgcctgatcgcgcaaggggtggagaccctctctggcttt
tgccggcttggcgaccgtctggcgaagggggacgaggccgcccgtcaggagatgctcgcg
atcgatgggattggcgacacggtcacggatgccctggcggcctttttccatgagccccgc
aaccgcgaagccctggaccggctggctgcggagatcagccccgccgcgccgcccaaaccc
gcgcaagacagccgtttcagcggcaagacggtggtgtttaccggcaagcttgagcgcatg
agccgggacgaggcgaaggcgcgggcgacgagccttggggcaaaagtgtcagggtcgatc
tccgccaagaccgattatctcgtggccgggccgggggcggggtcgaaactgaccaaagcg
aaggaccttggcgtcgacatccttaccgaagatgagtggcttgagttcatttcggacgaa
gccgtttcagttcaattggagtga
DBGET
integrated database retrieval system
