Pseudomonas brenneri: QDY63_20955
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Entry
QDY63_20955 CDS
T10502
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbre Pseudomonas brenneri
Pathway
pbre03030
DNA replication
pbre03410
Base excision repair
pbre03420
Nucleotide excision repair
pbre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QDY63_20955 (ligA)
03410 Base excision repair
QDY63_20955 (ligA)
03420 Nucleotide excision repair
QDY63_20955 (ligA)
03430 Mismatch repair
QDY63_20955 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbre03032
]
QDY63_20955 (ligA)
03400 DNA repair and recombination proteins [BR:
pbre03400
]
QDY63_20955 (ligA)
Enzymes [BR:
pbre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QDY63_20955 (ligA)
DNA replication proteins [BR:
pbre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QDY63_20955 (ligA)
DNA repair and recombination proteins [BR:
pbre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QDY63_20955 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QDY63_20955 (ligA)
MMR (mismatch excision repair)
DNA ligase
QDY63_20955 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QDY63_20955 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Tla3_C
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
WJM89821
LinkDB
All DBs
Position
complement(4556374..4558731)
Genome browser
AA seq
785 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ
RVGSAALSAFTQVRHEIPMLSLGNAFDEATMLEFDRRVTEGLDLPVGDLFGGGAAVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISVNVRTVRNIPLKLQGSGWPATLEVRG
EVFMSKAGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLQKWGMPISHELKLAKGIEDCLEYYRDIGERRNSLPYEIDGVVFKVNSIAY
QRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVSVVVERRPENARAVQIPQSCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLKYEQIIDLEGFADVSSKKLIAAIENSKTPTLARFIYALGIPDVGEET
AKVLARSLASLERVQQALPEVLTYLPDVGLEVAHEIHSFFEDSHNRQVIGALLSPDECAL
VLQDQGELSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFGSLEGVIKADWLDMRQAL
PEKQAKSVREFFDNEENARRALAIEQQLKDFGMHWQSEKKVVEGLPEAGRTWVLTGSLEL
MSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGVKVLDEEAFVAFLAK
HHITV
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgcatcctcgaactgcgcgctgaactggatcagcacaactac
cgctatcacgtactcgacgagccgagcatcccggacgccgagtacgatcggttgttccac
gaactcaaggcccttgaggccgagcacccggacctggttacccgtgattcgcccacgcag
cgggtcggcagcgcggcgttgtcggcctttacccaggtgcgccacgagatcccgatgctc
agcctgggcaacgcctttgatgaagccaccatgctggaattcgatcgccgggtcaccgag
ggcctcgacctgccagtgggcgatctgtttggtggtggcgcggcggtggaatacagctgt
gagcccaagctcgatggcctggcggtcagcctgctgtatcaggacggcgagctggtacgt
ggcgcgacccgcggcgatggcaccacgggagaagacatcagcgtcaatgtgcgcaccgtg
cgtaatattccgttgaagctgcaaggcagtggctggccggcgaccctggaagtgcgcggc
gaagtgtttatgtccaaggctggttttgagcgtttgaatgccacgcagttggaagtcggc
ggcaagacgttcgccaacccacgcaacgcagccgccgggagcctgcgccaactcgactcg
aagatcaccgccagccgcccgctggagttctgctgctacggcgtgacgacggatatcagc
gacacccatatcggtaacctgcagcagttgcagaagtggggcatgcccatcagtcacgag
ctgaagctggccaagggcattgaggattgcctggagtactaccgcgatatcggtgagcgg
cgtaacagcctgccgtatgaaatcgacggtgtggtgttcaaggtcaacagcatcgcctac
cagcgtgaactgggctttcgcgcccgcgagccgcgttgggccatcgcccataaattcccg
gcgatggaggagctgaccgagttgctggacgttgaattccaggtcggtcgcaccggcgcc
gtgacgccagtggcgcgcttgaagccggtcaaggtcgcgggcgtcaccgtgtccaatgcg
acgttgcacaacatggacgaagtggcgcgcctgggcttgatgattggcgacacggtgatc
atccgccgtgccggtgatgtgatcccacaggtcgtgtcggtggttgtcgagcgtcgcccg
gaaaatgcccgcgccgtgcagatcccgcagagctgcccggtgtgtggctcccacgtggag
cgcacgcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggcgcggtgtat
cgctgcgtcgggcgcctggcctgtggtgcgcagctcaagcaggcgattatccatttcgtt
tcgcgccgggccatggacatcgacggcctgggtgacaagaccatcgagcagttggtcgat
gaaaagctcattggctcgccggccgacctctacaaactcaagtacgagcagatcatcgac
ctggaaggctttgccgatgtttccagcaagaaactgatcgccgccatcgaaaacagcaag
accccgaccctggcgcgtttcatctacgccctgggcattcccgatgtgggcgaggaaacc
gccaaggtgctggcgcgctccctggcctctcttgagcgtgtccagcaggcgctgccggaa
gtgttgacgtacttgccggatgttggcctggaagtggctcacgagatccacagcttcttt
gaagacagccacaaccggcaggtgattggcgctctgctgtcgccggatgaatgtgcgctg
gtcttgcaggaccagggcgaactcagtgccgagtttgccgccagtaccaccctgggcggc
ttgctcgacaagttgcacgtaccttccgtggggccgggggctgcgcagaagctggcagac
aagttcggctccctggagggcgtgataaaggctgactggctggacatgcgccaggctttg
ccggagaagcaggccaagtccgtgcgtgagttctttgataatgaagagaatgcccgtcgt
gcgctggccattgagcagcagctcaaggacttcggcatgcactggcagagcgagaagaag
gtggtcgagggcctgcctgaggcgggccgcacgtgggtcttgaccgggtcgctggagctg
atgagccgcgacgtggccaaggaaaagctcgaaagcctgggcgccaaggtggcgggctcg
gtatcggcgaaaacccattgtgtggtcgcagggccgggcgccgggtcgaaactggccaag
gccagcgagctgggggtgaaggtcttggacgaggaggcgttcgtcgccttcctggccaag
caccacatcacggtctga
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