Pseudonocardia broussonetiae: HOP40_14980
Help
Entry
HOP40_14980 CDS
T07210
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbro
Pseudonocardia broussonetiae
Pathway
pbro03030
DNA replication
pbro03410
Base excision repair
pbro03420
Nucleotide excision repair
pbro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HOP40_14980 (ligA)
03410 Base excision repair
HOP40_14980 (ligA)
03420 Nucleotide excision repair
HOP40_14980 (ligA)
03430 Mismatch repair
HOP40_14980 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbro03032
]
HOP40_14980 (ligA)
03400 DNA repair and recombination proteins [BR:
pbro03400
]
HOP40_14980 (ligA)
Enzymes [BR:
pbro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HOP40_14980 (ligA)
DNA replication proteins [BR:
pbro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HOP40_14980 (ligA)
DNA repair and recombination proteins [BR:
pbro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HOP40_14980 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HOP40_14980 (ligA)
MMR (mismatch excision repair)
DNA ligase
HOP40_14980 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HOP40_14980 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QJY46962
UniProt:
A0A6M6JK15
LinkDB
All DBs
Position
2988984..2991329
Genome browser
AA seq
781 aa
AA seq
DB search
MSARKPSVVLGNLPVVSPVNAAERHAQLAEEVSGHLFRYHVLDAPIISDGQFDELWRELL
ALEEAHPELVTPESPTQRVGGFSTIFTAHDHLERMLSLDNAFAADELRAWAERVARDVGS
EEVHYLCELKIDGLAVNLLYEDGRLTRALTRGDGRTGEDVTLNMRTLVEVPERLTGTDEF
PVPALVEVRGEVYFRLEDFQALNAQMVEAGKPVYANPRNTAAGSLRQKDPRVTASRNLRL
ICHGFGKREGFALVRQSQGYDALRAWGLPVSERTVVLSGVDEVVAHTEYWGEHRHDIEHE
IDGVVVKVDEVALQRRLGSTSRAPRWAIAFKYPPEEAITTLLDIAVNVGRTGRVTPFAQM
EPVVVAGSTVSMATLHNAHEVKRKGVLIGDRVVIRKAGDVIPEVLGPVVDARNGSEREFV
MPTHCPECGTALAQQKAGDADLRCPNSRSCPAQLRERLFHVAGRGAFDIEGLGYEAAVAL
LQAGVVRDEGDVFALTEDDLLRTDLFRTKAGELSANGRKLLVNLESAKDRPLWRVLVGLS
VRHVGPTAAQALAREFRSMDAIEAAADSAARDTEAAGLVITSDGSADDPAEPVPAAEVEA
EAEALDAGAEAPAELSDEERAAAAEKQARAETRARTKALAAALAPIAGVEGVGPTIAAAL
RDWFSVDWHRDVVARWRAAGVRMVDEVDASVPRSLEGLSIVVTGSMEGFSRDEAKEAITA
RGGRAASSVSKKTAFVVAGDAPGSKYDKALEIGVPVLDEAGFRVLLERGPEAATEVATAG
A
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcccggaaaccgtcggtggtcctgggtaacctgccggtcgtgagcccagtcaac
gccgcggagcggcacgcgcagctggccgaggaggtctccgggcacctcttccgctaccac
gtcctcgacgcgccgatcatctccgacggccagttcgacgagctgtggcgcgagctgctg
gcgctggaggaggcgcaccccgagctggtcacgccggagtcgcccacgcagcgggtcggc
gggttctcgacgatcttcaccgcgcacgaccacctcgagcggatgctcagcctcgacaac
gcgttcgccgccgacgagctgcgcgcgtgggccgagcgcgtggcccgcgacgtcggctcg
gaggaggtgcactacctctgcgagctcaagatcgacgggttggcggtcaacctgctctac
gaggacggcaggctcacgcgcgcgctcacccggggcgacggccgcacgggcgaggacgtc
acgctcaacatgcgcacgctcgtcgaggtgccggagcggctcaccggcaccgacgagttc
ccggtgccggcgctggtcgaggtgcggggcgaggtctacttccggctggaggacttccag
gcgctcaacgcgcagatggtcgaggccggcaagccggtgtacgccaacccgcgcaacacc
gcggcgggctcgctgcggcagaaggacccgcgggtcacggcgtcgcgcaacctgcgcctc
atctgccacggcttcggcaagcgcgaggggttcgcgctggtccgccagtcgcagggctac
gacgcgctgcgggcgtgggggctgccggtgtcggagcgcaccgtggtgctgtcgggcgtc
gacgaggtggtggcgcacaccgagtactggggcgagcaccgccacgacatcgagcacgag
atcgacggcgtggtggtcaaggtcgacgaggtggccttgcagcgcaggctcggctccacc
tcgcgcgcgccgcgctgggcgatcgcgttcaagtacccgcccgaggaggccatcaccacg
ctgctcgacatcgccgtcaacgtcgggcgcaccgggcgcgtcacgccgttcgcgcagatg
gagccggtcgtcgtcgcggggtcgacggtgtcgatggccacgctgcacaacgcgcacgag
gtcaagcgcaagggcgtgctgatcggcgaccgcgtcgtcatccgcaaggcgggcgacgtc
atccccgaggtgctcgggccggtggtcgatgcgcgcaacggcagcgagcgcgagttcgtc
atgcccacccactgcccggagtgcggcacggcgctcgcgcagcagaaggcgggcgacgcc
gacctgcgctgccccaactcccggtcctgccccgcgcagctgcgggagcggctgttccac
gtcgcgggccgcggcgcgttcgacatcgagggactgggctacgaggccgccgtcgcgctg
ctgcaggccggggtggtgcgcgacgagggcgacgtcttcgcgctcaccgaggacgacctg
ctgcgcaccgacctgttccgcaccaaggcgggggagctgtcggccaacggccgcaagctg
ctcgtcaacctcgagtcggcgaaggaccggccgctgtggcgggtgctcgtcgggctgtcg
gtccgccacgtcgggcccaccgccgcgcaggcgctggcgcgcgagttccggtcgatggac
gcgatcgaggcggcggccgactcggccgcccgcgacaccgaggccgccggcctggtcatc
acctccgacggctcggccgacgacccggccgagccggtgcccgccgccgaggtcgaggcc
gaggccgaggccctcgacgcgggcgcggaggcgcccgcggagctgtccgacgaggagcgg
gccgcggcggcggagaagcaggcgcgcgccgagacgcgggcgcggacgaaggcactggcc
gcggcgctggcgccgatcgccggcgtcgagggcgtggggcccaccatcgcggcggccctg
cgcgactggttctccgtcgactggcaccgcgacgtcgtcgcccgctggcgcgcggccggg
gtgcggatggtcgacgaggtcgacgcctcggtgccccgctcgctggagggcctctcgatc
gtcgtcaccggctcgatggagggcttctcccgcgacgaggccaaggaggccatcaccgcc
cgcggcggccgggccgcgagctcggtgtcgaagaagaccgcgttcgtggtggcgggcgac
gcccccggctcgaagtacgacaaggccctggagatcggtgtgcccgtcctcgacgaggcg
ggcttccgcgtgctgctcgagcgcgggccggaggcggccacggaggtggcgacggccggg
gcctga
DBGET
integrated database retrieval system
