Pendulispora brunnea: LZC95_46280
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Entry
LZC95_46280 CDS
T10972
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbru Pendulispora brunnea
Pathway
pbru03030
DNA replication
pbru03410
Base excision repair
pbru03420
Nucleotide excision repair
pbru03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbru00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LZC95_46280 (ligA)
03410 Base excision repair
LZC95_46280 (ligA)
03420 Nucleotide excision repair
LZC95_46280 (ligA)
03430 Mismatch repair
LZC95_46280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbru03032
]
LZC95_46280 (ligA)
03400 DNA repair and recombination proteins [BR:
pbru03400
]
LZC95_46280 (ligA)
Enzymes [BR:
pbru01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LZC95_46280 (ligA)
DNA replication proteins [BR:
pbru03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LZC95_46280 (ligA)
DNA repair and recombination proteins [BR:
pbru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LZC95_46280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LZC95_46280 (ligA)
MMR (mismatch excision repair)
DNA ligase
LZC95_46280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LZC95_46280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
BRCT_2
RNA_ligase
End3
Motif
Other DBs
NCBI-ProteinID:
WXA93851
UniProt:
A0ABZ2K577
LinkDB
All DBs
Position
11694433..11696469
Genome browser
AA seq
678 aa
AA seq
DB search
MTAAERHAALVREIDAHNYRYYVLDDPNVTDAEFDRLLRELRALEEKHPELVNEHSPTQR
VAEQARANVVKVRHEVRMFSLDNTYSVEDLTEFARRVKAGLSESETVRYVIEPKLDGASI
EVVYEDGRLKMASTRGDGEIGEDITTNVRTIRGVPLSISHKGKLTLRGEVVFYRKDLESL
NAERAQEGLEPFANPRNAASGSLRMMDAREVARRPLRVVFYQIVEGPRLHKFHSESLDWL
AKEGLPSHRRHVAVPWEGVTEAILSIDRARADYPFETDGAVIKVDSYAQQDILGFTSKFP
KWAVAYKFAAERAWTKLTDIQVQVGRTGTLTPVAVLDPVQLAGTTVSRASLHNASFVAAL
DARIGDKVAIEKAGEIIPQVVLVDMEARSGDEVPWQMPTKCPECGTKVMARLLDEEKGQM
EAAIRCPNRLCPAQVKAQIFYFARRFAMDIDHLGLALVEQLVQRGAVKDVADLYDLTKEH
LLELERMGDKSAQNVIDSIQRSRERVLDRLLCGLGIPQIGQVAARQLAEQAGTLEHLLSW
NEEQAREQVASIHGFGPKMVDAVVAFLADTEQRRIMEKLVEHGVGQPQPKETVVTEGPLV
GSSFCVTGVLSRKREDVHADIRALGGTVFDSVKKGTTYLVAGEKTGKTKLDQAKKHATRV
ITETELAILLAGKELPPA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctgccgaacgccacgccgcactggtgcgcgagatcgacgcgcacaactaccgc
tactacgtgctggacgatccgaacgtcaccgatgccgagttcgaccggcttctgcgcgag
ctgcgggcgctggaggaaaagcaccccgagctggtgaacgagcactcgccgacccagcgc
gtcgccgagcaagcgcgcgcgaacgtggtgaaggtgcggcacgaagtgcgcatgttctcg
ctcgacaacacgtactcggtggaggacctcacggagttcgcgcggcgggtgaaggcgggc
ctctcggagagcgagacggtgcgctacgtgatcgagccgaagctcgacggcgcgagcatc
gaggtggtctacgaggacggccgtctgaagatggcctccacgcgcggcgatggcgaaatt
ggcgaggacatcaccaccaacgtgcgcaccatccgcggtgtgcccctttccatttcgcac
aagggcaagctcaccttgcgcggcgaggtggtcttctaccgcaaggacctcgagtcgctg
aatgcggagcgcgcgcaggaggggctcgagccgttcgcgaacccgcgcaacgcggcctcg
ggatcgctgcgcatgatggatgcgcgcgaggtggcgcggcggccgctgcgggtcgttttt
tatcaaatcgtggaagggcctcgcctgcacaagttccacagcgagagcctcgattggctg
gccaaggaggggcttccctcgcaccggcggcacgtcgccgtgccgtgggagggcgtgaca
gaagccattttgagcatcgaccgcgcgcgggcggattatcccttcgagacggacggcgcg
gtcatcaaggtggatagctacgcgcagcaggacatcctgggcttcacgtcgaagtttccc
aagtgggcggtggcctacaaattcgccgccgagcgcgcgtggacgaagctcacggacatc
caagtgcaggtcggacgcacgggaacgctcacgccggtggcggtgctcgatccggtgcaa
ctcgcaggcacgacggtgtcgcgcgcatcgttgcacaatgcaagcttcgtagcggcgctc
gatgcgcgcatcggcgacaaggtggccatcgagaaggcgggggagatcatcccgcaggtc
gtcttggtggacatggaggcgcgcagcggcgacgaggttccatggcagatgcccaccaag
tgccccgagtgcggcaccaaggtgatggcgcggctgctcgacgaggaaaaagggcaaatg
gaggcggccatccgctgtccaaaccgactttgccccgcgcaggtgaaggcgcagatcttt
tacttcgcgcgccgctttgcgatggacatcgatcatctggggctggcgctggtggagcag
ctggtgcagcgcggcgcggtgaaggatgtggcagatctgtacgatctgacgaaggagcat
ttgctcgagctcgagcgcatgggcgacaagagcgcgcaaaacgtgatcgactcgatccag
cgctcgcgcgagcgtgtgctcgatcggctgctgtgcgggctggggatcccgcagatcggg
caggtggcggcgcggcagctggccgagcaggcgggcacgttggagcatttgctttcgtgg
aacgaggagcaggcgcgcgagcaggtggcgagcattcacgggttcgggccaaagatggtc
gatgcggtggtggcgtttttggccgacaccgagcaacgacgcatcatggagaagctcgtg
gagcacggcgtcgggcagccgcagccgaaagagacggtggtgaccgaggggccgctggtg
ggcagctccttctgcgtgacgggcgtactctcacgcaagcgcgaagacgtccacgccgac
atccgcgccctcggcggcaccgtgttcgactcggtgaaaaagggcacgacgtacttggtc
gccggcgagaagaccggcaagacaaagctggatcaagcgaagaaacacgcgacccgcgtc
atcacggagaccgagctcgcgatccttttggccggcaaggaattgcctccggcgtag
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