Rubinisphaera brasiliensis: Plabr_4400 Help Entry Plabr_4400        CDS       T01431                                  Name (GenBank) DNA ligase   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism pbs  Rubinisphaera brasiliensis Pathway pbs03030   DNA replication pbs03410   Base excision repair pbs03420   Nucleotide excision repair pbs03430   Mismatch repair Brite KEGG Orthology (KO) [BR:pbs00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Plabr_4400    03410 Base excision repair     Plabr_4400    03420 Nucleotide excision repair     Plabr_4400    03430 Mismatch repair     Plabr_4400  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:pbs03032]     Plabr_4400    03400 DNA repair and recombination proteins [BR:pbs03400]     Plabr_4400 Enzymes [BR:pbs01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Plabr_4400 DNA replication proteins [BR:pbs03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Plabr_4400 DNA repair and recombination proteins [BR:pbs03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Plabr_4400    NER (nucleotide excision repair)     GGR (global genome repair) factors      Plabr_4400    MMR (mismatch excision repair)     DNA ligase      Plabr_4400   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Plabr_4400 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 Nlig-Ia PTCB-BRCT HHH Motif Other DBs NCBI-ProteinID:  ADY61973 UniProt:  F0SKJ2 LinkDB All DBs Position 5460335..5462362 Genome browser AA seq 675 aa AA seqDB search MSDGVAQEIASLRDEIERHNRLYYVEAQPEITDREFDRLLNRLIDLEQQHPEFQSPDSPT QKVGGQPIEGFQTVPHAVPMLSIENVFEPEGIDEFDRRICKLLDRETLDYTIEYKIDGVA LALVYEHGRLIRAVTRGDGQQGDDITSNARTARGVPLKLAGDNPPELLEVRGEAYIANSD FAVLRAEQEARGETVFANPRNSTAGALKLLDPKLSAQRKVRFVSHGIGAHSNFGVDTHFD YIEKLREFGLPTTPGIRVCHGIQEVREQIEMMMDDLHTLDLEVDGLVIKVNSLALREELG NTSKSPRWVIAYKWERYEATTRVEDIQIQVGKTGTLTPVAYLAPVEIAGTTVTRSSLHNR DELQRLDIRIGDYAVVEKAGKIIPHVLRVERERRDGSEQEFHFPTQCPECQTEVVQDEGG VYIRCPNPDCPARLRESLRFFASRQAMDIDGLGIKLIEQLVDAGLLTSLADIYRLPERRD EMLALDRMGEKSVDKVLKGIERSKEQPLWRLLTGLNIRHVGTSNARILAERFGSLGQLQE QSAENLAAVNEIGPVIAESVYEFLHSDFGATLVNQLADLGLNLGTAKQVSPEEEGAELPW AGKTFVLTGTLETFTRQQAEEEIRVRGGKASGSVSKKTSFVVAGAEAGSKLEKAEKLGIS ILTEADFTQMLEEVK NT seq 2028 nt NT seq  +upstreamnt  +downstreamnt atgagcgacggcgtcgcccaggaaatcgcctctttgcgcgatgagattgaacgtcataac cggctgtactacgtcgaagcgcagccggaaattacggaccgggaattcgatcggctgctc aaccgcctgatcgatctggagcagcaacacccggaatttcaatcgcccgacagccccacc cagaaagtgggcgggcagccgattgaaggctttcaaacggtccctcacgccgtgccgatg ctctccatcgaaaacgtcttcgagccagaaggcatcgacgaattcgaccgacgcatctgc aaactgctcgaccgcgaaacgcttgattacacaattgaatacaagatcgacggcgttgca ctggccttggtctacgaacatgggcgactgattcgcgccgtcacgcgcggcgacggccag caaggtgacgacatcaccagcaacgcccggacagctcgtggggttccactcaaattggca ggcgacaatccccccgaactgctcgaagttcgcggcgaagcctacattgccaacagcgac ttcgcggtgttgcgagcagagcaggaagcccgcggtgaaaccgttttcgccaatccaaga aacagcacagccggcgccttgaagctgctcgatccgaaattgtccgcccagcgaaaggtg cgattcgtctcccacggcattggtgcccattcaaacttcggcgtcgatacgcacttcgat tacatcgaaaagctccgcgaattcggcctgccaaccacgccaggaattcgcgtctgccac ggcattcaggaagtccgcgagcagatcgaaatgatgatggatgatctgcatactctcgac ctggaggtcgacggtctggtcatcaaggtcaactcgctggcgctacgggaggagctgggg aacacgagtaagagtccacgctgggtgattgcctacaaatgggaacggtatgaagcgacc actcgagtggaagacattcagattcaggtcggcaagaccggcacgctgactccggtggca tatctcgctccggttgaaatcgccggcaccaccgtcactcgctccagtttgcacaaccgg gatgaacttcagcgtctcgacattcgcattggcgactacgcggtggtcgagaaagcgggc aaaattattccgcacgtcctccgcgttgaacgggaacgccgcgacggctccgaacaggag tttcacttccccacgcaatgcccggaatgtcagaccgaagtcgttcaggatgaaggggga gtttacatccgctgccccaaccccgactgccctgcccgacttcgcgagtcactccgcttc ttcgcatcacggcaggcgatggatatcgacggactgggcatcaagctgattgaacagctc gtcgatgccgggctgttgaccagtctggcggacatttatcgtctcccagagcgtcgggat gaaatgctggctttggatcggatgggcgagaagtcggtcgacaaagtgctgaaaggcatt gaacggagcaaagaacaaccgctgtggaggttgttgaccggcctgaatatccgccatgtg ggaaccagcaacgcccggattctggccgaacgttttggttcgctgggacaattgcaggag cagtcggccgaaaatctggcggcggtcaacgaaattggcccggtaatcgcggaatcggtt tacgaatttctgcattccgatttcggcgccaccctggtgaatcaactggcggatctcggg ttgaatctgggcaccgccaaacaggtgtctcccgaggaggaaggagccgaactgccctgg gccggcaaaacattcgttttaaccggcacgctcgaaacatttacccgacagcaggcagaa gaggaaattcgggttcgtggtggaaaggcatcgggcagtgtttcgaaaaaaaccagcttc gttgtggccggtgcagaagcaggtagcaagctggaaaaagcggaaaaattagggatttcc atattgacggaggctgatttcacccagatgctggaagaggtgaaatag

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