Sedimentisphaera cyanobacteriorum L21-RPul-D3: L21SP3_01048
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Entry
L21SP3_01048 CDS
T04695
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbu
Sedimentisphaera cyanobacteriorum L21-RPul-D3
Pathway
pbu03030
DNA replication
pbu03410
Base excision repair
pbu03420
Nucleotide excision repair
pbu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L21SP3_01048 (ligA)
03410 Base excision repair
L21SP3_01048 (ligA)
03420 Nucleotide excision repair
L21SP3_01048 (ligA)
03430 Mismatch repair
L21SP3_01048 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbu03032
]
L21SP3_01048 (ligA)
03400 DNA repair and recombination proteins [BR:
pbu03400
]
L21SP3_01048 (ligA)
Enzymes [BR:
pbu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L21SP3_01048 (ligA)
DNA replication proteins [BR:
pbu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L21SP3_01048 (ligA)
DNA repair and recombination proteins [BR:
pbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L21SP3_01048 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L21SP3_01048 (ligA)
MMR (mismatch excision repair)
DNA ligase
L21SP3_01048 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L21SP3_01048 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
YhfH
zf-NADH-PPase
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AQQ09246
UniProt:
A0A1Q2HPS2
LinkDB
All DBs
Position
1343407..1345392
Genome browser
AA seq
661 aa
AA seq
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MDLKSKAKDLREQIRRHDYLYYVLNSPEISDFRYDELFRQLRELEADHPELITPDSPTQR
VSEAPSEGFERVSHLVPMLSIDNTYESAELRAFDSRVRKGLGSNDYSYTVELKIDGLAIS
LIYENGIFQRAATRGDGEQGDDVTANVKTIRSIPLKLNNPAAGRFEVRGEVFMSFSAFEK
TNKLRDAQDRQRFANPRNAAAGSLKLLDAKEVSKRELSFFCYGLAGAENFSAKGHFAALN
RLKEMGLPVNPEAAEAENIEQVIEIIQLWDEKRKTLNYPTDGMVIKVDSFEAQKKLGATG
RSPRWCMAYKFSAEQKQTKISSVDVQVGKTGILTPVANLEPVELAGTTVRRASMHNFDEV
ERLDARVGDTVLVEKAGEIIPQVVKVLRDHRPETSERFLPPKECPVCGSQTAKDKNGVYL
VCTNPNCPARLKGRLVYFVGKGQMDIDTLGPAVIEQLIEKGLVKNFSDLYGISREDLTSL
DKIGDKSAENILASIEKSKETPLWRFVKALGIRYIGGQNAEILAERFGSLEAIMNASAED
MEAIDQIGPVAAASVKEYFADAENRETVNNLLARGVRPYVQQSGEEKPLAGKTFVVTGTL
SQFTRDQVKEFISQNGGKVSSSVSSKTDYLLAGEKAGSKLKKASSLGVEIINEQELKEIC
S
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacttaaaatcaaaagcgaaagatttacgagagcagatccgcaggcacgactacctc
tactacgtcttaaacagcccggagatatcggatttccgatacgacgagcttttcaggcag
ctaagggagctagaagccgaccatcccgagctcataacgcccgattcgcccacgcagcgg
gtatctgaggccccgagcgaggggttcgagcgggtgagccatcttgtgccgatgctcagc
atagacaacacctacgaaagcgcagagctccgcgccttcgacagccgcgtgcgcaagggg
ctgggcagcaatgattactcatatactgttgagctgaagatcgacgggcttgcgataagc
ctgatatacgaaaacggaatattccagcgagcagccacccgaggcgacggtgaacagggc
gatgatgtaaccgcaaacgtgaagacaatccgctccatcccgctgaagctcaataatccc
gcagcgggcagattcgaggttcggggcgaggtgtttatgtctttcagtgcattcgagaaa
accaacaagctccgagacgctcaagacaggcagcgatttgcaaacccgcgaaacgccgct
gcagggtcgctgaaactgctcgatgcgaaagaggtgtctaagcgggagctctcattcttc
tgctacgggcttgcaggagcggaaaacttctctgcgaaggggcatttcgccgccctgaac
aggctcaaagagatggggcttccggtgaatccggaggcagcagaggccgaaaatatcgag
caggttatcgagataatccagctctgggacgaaaaacgcaaaaccctcaattatcccaca
gacgggatggtaatcaaggttgacagcttcgaggcccagaagaagctcggggctacgggc
agaagcccgagatggtgcatggcgtataaattcagcgccgagcagaagcaaacgaaaatc
tcctccgttgatgttcaggtgggcaaaacgggcatcctcacccccgttgccaatctcgag
ccagtggagcttgcagggacaaccgtacgaagagcctccatgcacaacttcgacgaggtg
gaaaggctggatgcaagagtgggcgatactgtgcttgtggagaaggcaggcgagattatc
ccgcaggtggtgaaggtgctcagagaccaccgcccggaaacgagcgagagattcctgcct
cccaaggaatgccccgtttgcggcagccaaaccgccaaagacaagaacggggtgtatctg
gtctgcacaaacccaaactgcccggcaaggctcaagggcaggctcgtttacttcgtgggc
aagggacagatggacatcgacacgctcggcccggccgtaatcgaacagctgatagagaag
gggctcgtgaaaaatttttcagatttgtacggaatttccagagaagatttgacatcctta
gataagataggcgataaaagcgcggaaaacatactcgcatcgattgaaaagagcaaagag
acaccgctttggcggtttgtaaaggcgcttggcataagatacatcggcgggcagaacgcc
gagatactcgctgagcgtttcggctctctggaggcgattatgaacgcctcagcggaggat
atggaagcgatagaccagatcggccccgttgcagcagcaagcgtgaaggaatatttcgca
gatgcagaaaacagggaaacagtgaataatctgctggctcgcggcgtcaggccgtacgtc
cagcagagcggtgaggaaaagccgcttgcagggaaaaccttcgtggtaaccggcacgcta
tcgcagttcacaagggatcaggtgaaggaatttatctcacagaacggcgggaaggttagc
tcgagcgtgagctcgaaaaccgactacctccttgcgggcgaaaaagcaggctcaaagctg
aaaaaggccagcagcctcggcgttgagataataaatgaacaagagctcaaggaaatttgc
agttaa
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integrated database retrieval system
