Peribacillus butanolivorans: DTO10_13845
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Entry
DTO10_13845 CDS
T06699
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbut
Peribacillus butanolivorans
Pathway
pbut03030
DNA replication
pbut03410
Base excision repair
pbut03420
Nucleotide excision repair
pbut03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbut00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DTO10_13845
03410 Base excision repair
DTO10_13845
03420 Nucleotide excision repair
DTO10_13845
03430 Mismatch repair
DTO10_13845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbut03032
]
DTO10_13845
03400 DNA repair and recombination proteins [BR:
pbut03400
]
DTO10_13845
Enzymes [BR:
pbut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DTO10_13845
DNA replication proteins [BR:
pbut03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DTO10_13845
DNA repair and recombination proteins [BR:
pbut03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DTO10_13845
NER (nucleotide excision repair)
GGR (global genome repair) factors
DTO10_13845
MMR (mismatch excision repair)
DNA ligase
DTO10_13845
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DTO10_13845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
5_3_exonuc
HHH_3
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AXN41785
LinkDB
All DBs
Position
2895644..2897650
Genome browser
AA seq
668 aa
AA seq
DB search
MDIQAAEKIVLELQTLLNQYSYEYYVMDQPSVPDAEYDRLLRELIEYEEKFPELKTADSP
TQRVGGAILDMFEKVEHTTPMLSLGNAFNESDLRDFDRKVRQAVGDNFSYVCELKIDGLA
VTLQYENGYFVRGATRGDGTIGEDITENLKTIKSIPLKVRKPIAIEVRGEAFMPKKSFES
LNKAKEERGEEPFANPRNAAAGSLRQLDPKLAAKRNLDVYLYAIADLGETGVRSHSEGLD
LLDELGFKTNKERKTCTNIEEVLAYIEEWTEQRPNLAYDIDGIVVKVDSLEQQDELGFTA
KSPRWAIAYKFPAEEVITTLRAIELNVGRTGVLTPTAVLDPVRVAGTTVQRASLHNEDLI
REKDIRIGDQVVVKKAGDIIPEVVNVLAERRTGEEVEFQMPTECPECDSELVRLDGEVAL
RCINPKCPAQIREGLIHFVSRTAMNIDSLGEKVISQLFKEALIQDVADIYKLTYDQVIAL
ERMGDKSVNKLLQAIEASKSNSLEKLLFGLGIRHVGSKAAKTLAREFGTMEALSKASREE
LTAINEIGEKMADSIVAYFELEEVHALLNELEAAGVNLTYKGARAVSIEEIDSIFAGKTV
VLTGKLHQLTRNEAKEKLEALGANVAGSVSKKTDLVVAGEDAGSKLEKAESLGVLVWDEE
RLIEELKK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggacatacaagctgcagagaagattgttcttgagctgcaaactttattgaaccaatat
agctatgaatattatgtgatggaccagccatccgtacctgatgctgaatatgatcggctt
ttacgtgaattaattgagtatgaagagaaatttcccgagctgaaaacagccgattctcca
acacagcgggtcggtggagccatcctggatatgttcgaaaaagtggagcatacgacaccg
atgcttagcctaggtaatgctttcaatgaaagtgacttacgagatttcgacagaaaggtc
cgacaggctgtaggtgacaatttttcctatgtgtgtgaattgaaaatagatggactagcc
gtcacacttcaatatgaaaatggatatttcgtaagaggagcaacccgaggagacggaaca
attggtgaagatattaccgaaaacctgaaaacaatcaagtcaattcctttgaaggtacgg
aagcctattgccatagaagtgcgtggtgaggcattcatgccaaaaaaatcattcgaatct
ttaaataaggcgaaggaagaacgcggggaagaaccttttgcaaatcctcgtaatgcagct
gctggctctttaagacaacttgacccaaaacttgccgcgaaacggaacttggatgtatac
ctttatgcgattgctgatttaggtgaaacaggggttcgttctcacagcgagggtctagat
ttattggatgaactagggtttaaaacaaataaggaacgaaaaacctgtacgaatatagag
gaagttcttgcctatatagaagaatggactgaacaacgtccaaacttggcctacgatatc
gatggaattgtcgtaaaagtggattcacttgaacagcaggatgaactaggctttacggca
aaaagtccgcgatgggcgattgcctacaaatttccagccgaagaagtcatcacaacacta
agagctatcgagctgaatgttggccggacgggagtgttgacaccaacggctgttttggat
cctgttcgggtagcgggaacgactgtgcaacgagcttcgctgcataacgaagatttaatc
cgtgaaaaggacatccgtattggagatcaagtggtcgtgaaaaaagcaggcgatatcatt
ccagaggtcgtcaatgtactagcagaacgtcgtacgggggaagaagtcgagttccagatg
ccgactgagtgcccagaatgtgatagcgagcttgtccgactggatggggaggtcgcgcta
cgatgcatcaacccgaaatgtccggcacaaatccgagagggcttgattcactttgtatca
cggacagcaatgaatatcgacagtttaggtgaaaaagtaattagccagttatttaaggaa
gcgctcatacaggatgtagctgatatttataagcttacatacgatcaagtgatagcattg
gaacggatgggagataaatccgtcaataaactccttcaggcaatcgaagcttcgaaaagc
aattcgctagaaaaattactattcggccttggtatccgccatgttggttcgaaagcagcg
aagacccttgcgagggaattcggcactatggaagcattaagcaaggcgagccgtgaagaa
cttacagcaattaatgaaattggagaaaaaatggctgattccatcgtggcgtattttgaa
ttggaggaagtgcatgcactgttgaatgagttggaagcagccggtgtgaaccttacctat
aaaggggcaagagctgtttctatagaagaaatcgattccattttcgctggaaaaacagtc
gttttgacagggaaactgcatcagctaacacgtaatgaagcgaaagaaaaattagaggcg
ctaggagctaacgttgccggaagtgtcagcaagaaaacggatttggtcgtggccggcgaa
gatgctggttccaaactagaaaaggcagaaagcctaggcgttctcgtatgggatgaagag
agactgattgaggaactaaaaaaataa
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