Pseudoalteromonas sp. Bsw20308: D172_011795
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Entry
D172_011795 CDS
T04175
Symbol
ligA
Name
(GenBank) aromatic ring-opening dioxygenase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pbw
Pseudoalteromonas sp. Bsw20308
Pathway
pbw03030
DNA replication
pbw03410
Base excision repair
pbw03420
Nucleotide excision repair
pbw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pbw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D172_011795 (ligA)
03410 Base excision repair
D172_011795 (ligA)
03420 Nucleotide excision repair
D172_011795 (ligA)
03430 Mismatch repair
D172_011795 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pbw03032
]
D172_011795 (ligA)
03400 DNA repair and recombination proteins [BR:
pbw03400
]
D172_011795 (ligA)
Enzymes [BR:
pbw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D172_011795 (ligA)
DNA replication proteins [BR:
pbw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D172_011795 (ligA)
DNA repair and recombination proteins [BR:
pbw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D172_011795 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D172_011795 (ligA)
MMR (mismatch excision repair)
DNA ligase
D172_011795 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D172_011795 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ALQ08676
LinkDB
All DBs
Position
complement(2710168..2712186)
Genome browser
AA seq
672 aa
AA seq
DB search
MSSSISEQVNHLRTTLEQHNYNYYVLDTPSIPDSEYDRLLRELSALETEHPESLTADSPT
QKVGGAALSKFEQVAHQVPMLSLDNAFSEEEFTAFNRRIKERLMSTDELTFCCEPKLDGL
AVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMNSAG
FDKLNSEAQKRGDKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHY
QQLEKLTDWGLPLCPETKLVEGPKAALEYYSDILTRRSELKYEIDGVVIKINQKALQERL
GFVARAPRWAIAYKFPAQEEITQLLDVDFQVGRTGAITPVARLEPVFVGGVTVSNATLHN
SDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPDDARDIEFPVTCPICDSHIEKVEG
EAVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFVLKQG
HFESLERMGPKSAKNLVSALDEAKGTTLAKFLYSLGIREAGEATAQNLANHFLTLENVIN
ASIDSLTQVSDVGEIVAAHVRGFFAEEHNLAVVNALIEQGVNWPALSAPSEEEQPLAGLT
YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDILTE
DELIELLKKHNG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcagcattagtgagcaagttaatcatcttcgtactacattagagcaacacaat
tataactattatgtgcttgatacccccagtattcctgactctgaatacgataggttatta
cgcgaactaagcgcactagaaaccgagcaccctgaatctttaaccgccgactccccaaca
caaaaagtaggcggtgcagcactgagtaaatttgagcaagtagcgcaccaagtacccatg
ctttcacttgataacgcctttagtgaagaagagttcactgcgtttaatcgccgtataaaa
gagcgtttaatgagtaccgatgagcttactttttgttgtgagccaaaacttgatggttta
gctgtatcaattatttatcgtgatggtgtacttgtacaagcggctacgcgaggtgatggt
tttaccggtgaaaacattactcagaatgtaaaaacaattcgtaatgtaccacttaagtta
cgtggcgattacccaaaagagcttgaagtgcgcggcgaagtatttatgaacagcgccggc
tttgacaaactaaattcggaagcgcaaaaacgtggagacaaagtattcgttaatccgcgt
aacgcagcggcaggtagcttacgccaactcgactctaaaattaccgctaaacgcccattg
atgttttatgcttacagtactggacttgttgctgatggcagcattccagaggatcactat
cagcaactagaaaagctgactgactgggggttgccactgtgcccagaaacaaaattagtt
gaaggtccaaaagccgcgcttgagtactacagcgatattttaacgcgccgtagcgagctt
aaatatgaaattgatggcgtagtaatcaaaataaaccaaaaggccttacaagagcgttta
ggctttgtagcacgtgctcctcgttgggctattgcttataagtttccggcgcaagaagaa
ataactcaattacttgatgttgattttcaagttgggcgcacaggggcaattacgccagtt
gcgcgtttagagcctgtttttgtcggtggtgtaaccgtatcaaatgcaacacttcataat
agcgatgaaattgcacgtttgggtgtaaaagtaggcgacacggttattattcgtcgcgca
ggagatgtaatcccgcaaataacacaagttgtacttgaacgccgtcctgatgatgctaga
gatattgaatttccagtgacttgtccgatttgtgattcgcatattgaaaaagtggaaggt
gaagctgtagcccgttgtactggcgggcttgtgtgtcctgcacaacgcaaacaagcgata
aaacactttgcttcacgaaaagcgctagacatagatggccttggcgataagattgttgat
caacttgtagatagagagcttataaaaacgcccgctgatttattcgttttaaaacaaggg
cattttgaatcacttgaacgtatgggacctaagtcagctaaaaacttagtatcagcactt
gatgaagctaaaggcactacgctcgctaagtttttatactcactaggtattcgtgaagcg
ggggaagcgacagcacaaaatttagctaatcactttttaacccttgaaaatgtaattaat
gccagcattgatagtttaacgcaggtaagtgatgtcggtgaaatagttgcagcgcatgtt
cgcggtttttttgctgaagagcataatttagcggtagtaaacgcattaatagagcaaggc
gtaaattggccagcgttaagtgcgccttctgaggaagagcaaccactcgcaggacttaca
tatgtacttaccggcacgcttaatacacttaaccgtaatgatgctaaagctcgcttgcag
caattaggtgctaaagtctcgggtagcgtatcggctaaaacagatgcgttagtcgcaggt
gaaaaagcaggttcaaaactaactaaagcgcaagatttaggtatcgacatactcacggaa
gatgaattaattgagctgcttaaaaagcataatggctag
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