Segatella bryantii: L6471_10295
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Entry
L6471_10295 CDS
T08221
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pby
Segatella bryantii
Pathway
pby03030
DNA replication
pby03410
Base excision repair
pby03420
Nucleotide excision repair
pby03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L6471_10295 (ligA)
03410 Base excision repair
L6471_10295 (ligA)
03420 Nucleotide excision repair
L6471_10295 (ligA)
03430 Mismatch repair
L6471_10295 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pby03032
]
L6471_10295 (ligA)
03400 DNA repair and recombination proteins [BR:
pby03400
]
L6471_10295 (ligA)
Enzymes [BR:
pby01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L6471_10295 (ligA)
DNA replication proteins [BR:
pby03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L6471_10295 (ligA)
DNA repair and recombination proteins [BR:
pby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L6471_10295 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L6471_10295 (ligA)
MMR (mismatch excision repair)
DNA ligase
L6471_10295 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L6471_10295 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
HHH_2
PTCB-BRCT
BRCT_2
HHH_5
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
UKK75579
LinkDB
All DBs
Position
1:1482774..1484891
Genome browser
AA seq
705 aa
AA seq
DB search
MAEDKILEMRKAVDLLNRAADAYYNGQAEIMTDYEWDALFDRLKVLEQETGVILEESPIH
HVSADSITGQKEEHEFAALSLAKTKKTEDLTKWADGKPIWISWKLDGLTLVATYDKGKLT
KVVTRGDGHFGTNITHLAPAIQGIPQKIKNKGHIVVRGECVISYADFNQFLIESGEDYAN
PRNLASGSLTLKDIDEVKSRHLQWIPFTLVYTDENINSWGKRMAFLEDNGMKTVKHECIL
TPNQDNIQKVIDRWTEEVTKNKNPFPVDGLVIAYEDYEYSQTGSITGHHATRAGYAFKWK
DESATSKLDHIEWSCAASTISPVAVFEPVELEGTTVQRASLCNISECERLGIGDKDSVLS
VIKANKIIPKVIQVQQKVGELHIPETCPVCHSQTQIVTSIASGTRTLHCSNPKCPAKQLK
KFARFVSKDGLDIDGISEQTLSRFINMGWIKEYADIFRLSAHLNQIATLEGFGKKSANNI
HKAIEKSRNAEAHKLLYALCIPLVGKDVCNRLLKSYPLEKLAAIASGNPNINKPIVTEKE
DDYELDLFAQHEQENLLSNTTEGTTDANTFTPLSIDTRIAIFAGIDGLGPEKSASVVKWF
SDEENQNEYRNLLGLLHLSQDDNNPLGQKCEGLTFVITGDVHHYKNRNELKAYIESQGGK
VTGSVSKSTSYLINNDVTSTSGKNQKAHQLNIPIISEDQFIEQFG
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagacaaaatattagaaatgagaaaggctgtggatctattgaatagagctgca
gacgcttattataacggtcaggcagaaataatgaccgactacgaatgggatgctcttttt
gacagactcaaagttttagaacaggaaacaggagttatacttgaagagtcccctattcat
catgtatccgccgacagcataacaggccaaaaggaggagcatgaatttgccgctttatca
ttagccaaaacaaaaaaaacagaagatcttacaaaatgggcagatggaaagcccatctgg
atttcatggaaacttgatggactaacactggtcgctacttacgacaaagggaaacttaca
aaagtagttacacgaggagatggtcatttcggtacgaatattacccacttggcaccagct
atccaaggtattccccaaaagattaaaaataaaggccatattgtagtcagaggcgagtgc
gttatttcatatgccgactttaatcaatttcttattgaaagtggcgaagactatgccaat
ccaagaaatctagcatcaggatcgctcacactgaaagatattgatgaagtaaaatcacgt
caccttcagtggatacctttcactttggtctatactgatgagaatatcaatagttgggga
aaacgtatggcattccttgaggataatggtatgaaaaccgtaaaacacgaatgtatactt
actccaaaccaagacaacattcaaaaggttattgatcgatggactgaagaagttaccaag
aataagaatcctttccctgtagatggattggttatcgcctacgaagattacgaatactct
caaacaggaagcatcactggccatcatgcaacacgagcaggatatgccttcaaatggaag
gatgaaagcgcaacttctaagctcgaccacatcgaatggagttgcgcagcaagcacaata
tcccctgtagcagtatttgaacctgtagagttggaagggacaactgtacaacgagctagc
ctttgtaatatcagcgaatgtgagcgcttaggcattggtgacaaagatagtgtactatct
gttatcaaagctaataagattattcctaaggttattcaagtacaacagaaagtaggtgaa
ctacatattcctgaaacttgtcctgtctgtcattcacagacacaaattgtcacaagtatc
gccagcggaacacggactctgcactgttccaatcccaaatgtccagcgaaacagttgaaa
aaattcgcacgttttgtttcgaaagatggtctcgacattgatggtatcagtgaacaaact
ctttctcgattcataaacatgggatggataaaggaatatgctgatatcttcagactttca
gctcacctcaatcagatagcaactctagaaggctttggtaaaaaaagtgccaataacatt
cacaaagctattgagaagagtcgaaatgctgaagcacacaagttactttatgcgctctgc
attcctttagtcggcaaagatgtatgtaatcgcctgctcaaaagctatccacttgaaaaa
ctggcagctatagccagcggtaatccgaacatcaacaagcctattgttacagaaaaggag
gatgactacgaactcgacctctttgcacagcatgagcaagaaaatcttctatcgaatact
acagaaggtactacagatgcaaatacgtttactccactcagcatcgatacacgtattgct
atttttgcaggaatagacggtttaggaccagagaaaagtgcatctgtggtgaaatggttt
agtgatgaagaaaatcagaatgaataccgcaatttattagggctactccacttatcacaa
gacgataataacccgttgggacagaaatgcgaaggacttaccttcgtaataaccggtgat
gtacatcactataagaaccgtaacgaactcaaagcgtatattgagagccaaggaggaaaa
gttacaggaagcgtaagcaaaagcacttcctatcttatcaataatgatgtgacatcgact
agtggtaaaaaccaaaaagcccatcaactgaacatcccgattatctcagaagaccagttt
attgagcaattcggataa
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