KEGG   Syntrophotalea carbinolica: Pcar_2213
Entry
Pcar_2213         CDS       T00285                                 
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pca  Syntrophotalea carbinolica
Pathway
pca03030  DNA replication
pca03410  Base excision repair
pca03420  Nucleotide excision repair
pca03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pca00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Pcar_2213 (ligA)
   03410 Base excision repair
    Pcar_2213 (ligA)
   03420 Nucleotide excision repair
    Pcar_2213 (ligA)
   03430 Mismatch repair
    Pcar_2213 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pca03032]
    Pcar_2213 (ligA)
   03400 DNA repair and recombination proteins [BR:pca03400]
    Pcar_2213 (ligA)
Enzymes [BR:pca01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Pcar_2213 (ligA)
DNA replication proteins [BR:pca03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Pcar_2213 (ligA)
DNA repair and recombination proteins [BR:pca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Pcar_2213 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pcar_2213 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     Pcar_2213 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Pcar_2213 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 Nlig-Ia DNA_ligase_ZBD PTCB-BRCT HHH RNA_pol_A_CTD APG6 BRCT_2
Other DBs
NCBI-ProteinID: ABA89452
UniProt: Q3A2F5
LinkDB
Position
2586583..2588598
AA seq 671 aa
MDKAQRIRRYQQLCDELHRHSRLYYTYDRPEITDAEYDRLFRELLELEKAYPELVTAASP
SLRVGASPLSQFTPVPHSRPMLSLENALTEDELYDFDARIRKLLASDAPVRYVCELKMDG
VAVELVYRDGILSVGSTRGDGTTGEGITENLRTIPSIPLVLSGEAPALLEVRGEVYIDLD
DFQKLNHEREEEGLQVFANPRNAAAGSLRQLDSAVTAKRPLKIFCYGIGQLSGEHPASHH
SLLKCMHRWGLRVNLEHSRTLEGIEQVTDYFRQLQQRRDELPYEIDGMVVKVDDLALQRE
LGEKTRTPRWAIACKFPPRQAVTVVEDIVLQVGRTGAITPVAQLKPVEVSGVTVSRASLH
NWDEIARLDVLIGDTVVVERAGDVIPDVVKVLTEHRNGQERSVPLPQSCPACGGPVVKLE
GEVVPRCQEMSCPARLRESIKHFVARRAMDIDGLGERTIEQLLKRELIKSVADLYHLTKE
DLLLCERLADKSAEKLLTAIAASKTRPLGRFLFALGIRHVGEHLASLLARQFGSLDALSH
ATREELLAIHEIGPQVADSVTDFFAKSRNREILAALQRAGVAPQAEEKRSGGPLTGKSFV
FTGSLTRFSRKQAQEMVERLGGRASGSVSKKTDCVVAGEAAGSKLEKARQLNIQILSEEE
FLQMIDTLEEA
NT seq 2016 nt   +upstreamnt  +downstreamnt
atggacaaggcacaacgaatccgccgttatcaacaactgtgtgacgaactgcatcgccac
agcaggctttactacacctatgatcgccctgaaataaccgacgcggaatacgaccgcctg
tttcgggaactgcttgagttggaaaaagcgtatcccgagctggtgacggccgcttcgccg
tccctgcgcgtaggcgcttcgcctctgtcgcaattcacgccagtaccccacagccgcccc
atgctgtccctggaaaacgctctgaccgaagatgaactttatgacttcgacgcccgcatc
cggaaacttctggccagcgatgcaccggtgcggtacgtttgcgagctaaaaatggatggg
gtagcggtcgaattggtctatagagacggaatcctctccgtcggatccacccgcggcgac
gggaccaccggcgagggcatcaccgaaaacctgcgcacgatcccctccatacctctggta
ctgagcggcgaagcgcctgcgcttctggaagttcgcggcgaggtctatatcgacctggac
gactttcaaaaacttaaccatgagcgcgaggaagaaggcttacaggtatttgccaacccg
cgcaacgccgccgccggcagtctgcgccaactcgactccgcagtcaccgccaagcgacca
ctgaaaatattctgctacggcatcggccagctttccggagaacatcccgccagccaccac
tcattgctgaagtgcatgcatcggtggggactgcgcgtcaatctggaacactcgcgcacc
cttgaaggcatcgaacaagtcacggactatttccgtcagctgcaacagcgccgagacgaa
ctcccctacgagatcgatggcatggtggtcaaagtcgacgatctggccctgcaacgcgaa
ttgggggaaaaaacccgtaccccccgctgggccattgcctgcaagttccccccccgtcaa
gcggttactgtggttgaagatatcgtgctgcaagtcgggcgtaccggtgccataacgccg
gtggcgcaactgaaacccgttgaggtcagcggtgtcacggtatcgcgcgccagtctgcac
aactgggatgaaatcgcgcgcctcgacgttctgataggcgacacggtggttgtcgagcgc
gccggcgacgtcatccccgatgtcgtcaaggtactgacggaacaccgtaacggccaagag
cgcagcgtgcccctaccgcaaagctgcccggcttgcggcggaccggtggtcaagctcgaa
ggtgaagtggtgccgcgttgccaggaaatgtcctgcccggcgcgcctgcgcgaatcgatt
aaacatttcgtcgcccgtcgcgccatggatatcgatggcctcggtgaacgcaccatcgag
caactgctgaaacgggagctcatcaagagtgtggcggatctttaccatcttaccaaagaa
gacctgttgctttgcgaacgcctggcggacaaatcggcggaaaaactgttgaccgccatc
gccgcaagcaaaacccgccctttgggtcgcttcctttttgccctgggcattcgccacgtg
ggggaacacctggccagtctgttggcccggcagttcggctctctggatgccttgtcgcac
gccacccgcgaggaactgctggccatacacgagatcggtccccaggtcgccgacagcgtc
accgatttttttgccaaatcgcgcaaccgcgagattctcgctgctctgcaacgcgccggg
gttgcaccgcaagcggaagagaagcgcagcggcggccccctgactggcaagtccttcgta
tttaccggtagcctgacccgtttctcacgcaaacaggcgcaggaaatggtggaacggttg
ggtggacgcgccagcggttccgtcagcaaaaaaactgactgcgtggttgccggtgaagcc
gctggcagcaagctggaaaaggctcgtcaactcaacatccagattctcagcgaagaagag
ttcctgcagatgatcgacacactggaggaggcatga

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