Pseudomonas canadensis: V6L78_11555
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Entry
V6L78_11555 CDS
T10710
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcaa Pseudomonas canadensis
Pathway
pcaa03030
DNA replication
pcaa03410
Base excision repair
pcaa03420
Nucleotide excision repair
pcaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V6L78_11555 (ligA)
03410 Base excision repair
V6L78_11555 (ligA)
03420 Nucleotide excision repair
V6L78_11555 (ligA)
03430 Mismatch repair
V6L78_11555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcaa03032
]
V6L78_11555 (ligA)
03400 DNA repair and recombination proteins [BR:
pcaa03400
]
V6L78_11555 (ligA)
Enzymes [BR:
pcaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V6L78_11555 (ligA)
DNA replication proteins [BR:
pcaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V6L78_11555 (ligA)
DNA repair and recombination proteins [BR:
pcaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V6L78_11555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V6L78_11555 (ligA)
MMR (mismatch excision repair)
DNA ligase
V6L78_11555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V6L78_11555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
5_3_exonuc
PTCB-BRCT
Tla3_C
Motif
Other DBs
NCBI-ProteinID:
WWL86491
LinkDB
All DBs
Position
2479000..2481360
Genome browser
AA seq
786 aa
AA seq
DB search
MTAAHTRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAEHPDLVTRDSPTQ
RVGSAALSAFTQVKHEIPMLSLGNAFDETTMLEFDRRVTEGLDLPAGDLFGGGAVVEYSC
EPKLDGLAVSLLYQDGELVRGATRGDGTTGEDISINVRTVRNIPLKLHGSGWPATLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITASRPLEFCCYGVTTDIS
DTHIGNLQQLQKWGMPISHELKLAKGVQDCLDYYRDIGERRNSLPYEIDGVVFKVNSIAS
QRELGFRAREPRWAIAHKFPALEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNA
TLHNMDEVARLGVMIGDTVIIRRAGDVIPQVVSVVLERRPENARAVPIPESCPVCGSHVE
RTQLVKRSKGKETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIDGLGDKTIEQLVD
EKLIGSPADLYKLKYEQIIDLEGFADISSKKLITAIENSKSPTLARFIYALGIPDVGEET
AKVLARSLASLERVQKALPEVLTYLPDVGLEVAHEIHSFFEDSHNQDVIGALLSPQECGL
QLQDQGDLSAEFAASTTLGGLLDKLHVPSVGPGAAQKLADKFVTLEGVIKADWLDMRQAL
PEKQAKAVREFFDNADNASRALAIEQQLKDFGMHWNSEKKVVEGLPEAGHTWVLTGSLEL
MSRDVAKEKLESLGAKVAGSVSAKTHCVVAGPGAGSKLAKASELGLKVLDEEAFVAFLAK
HNISVD
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgcccacacccgcatcctcgaactgcgcgctgaactggatcagcacaactac
cgttaccacgtcctcgacgagccgagcattccggacgccgagtacgaccggctgttccat
gaactcaaggccctcgaggccgagcacccggacctggtcacgcgcgattctccgacgcag
cgggtcggcagtgcggcgttgtcggcgttcacccaggtcaagcatgagatccccatgctc
agcctcggcaacgcctttgacgaaaccaccatgctggaattcgatcgccgggtcaccgaa
ggcctcgacctgccggccggcgatctgtttggcggtggcgcggtggtggaatacagctgc
gaacctaagctggatggcctggcggtcagcctgctgtatcaggacggcgaactggtgcgc
ggcgccacccgtggcgacggcacgaccggcgaagacatcagcatcaacgtgcgcaccgtg
cgcaatatcccgttgaaactgcacggcagcggctggccggcgaccctggaagtgcgtggc
gaagtgttcatgtccaaggccggtttcgagcggctcaacgcctcgcaactggaagtcggc
ggcaagacgttcgccaacccgcgcaacgccgctgccggcagcctgcgtcagttggattcg
aagatcaccgccagccgacccttggagttctgctgctacggtgtaaccaccgacatcagc
gacacccacatcggcaacctgcaacagttgcagaaatggggcatgcccatcagtcacgaa
ctgaagctggccaaaggcgtccaggattgcctggactactaccgcgatatcggcgagcgg
cgcaacagcctgccgtatgagatcgacggcgtggtgttcaaggtcaacagcatcgcttcc
caacgtgagctgggcttccgtgcccgcgaaccgcgctgggccatcgcgcataaattcccg
gccctggaagagctgaccgaattgctcgacgtggaattccaggtcgggcgtaccggcgcc
gtcacaccggtggcgcgattgaagccggtcaaggtcgcgggtgtcaccgtgtccaatgcc
accttgcacaacatggatgaagtggcgcggctgggcgtgatgatcggcgataccgtgatc
attcgccgcgccggggatgtgatcccgcaggtggtctcggtggtgcttgagcgccgtccg
gaaaacgcccgtgcggtgccgatccccgaaagctgccccgtctgcggttcccacgtggaa
cgcactcaactggtcaagcgcagcaagggcaaggaaaccgtcagcgaaggcgcggtgtac
cgttgcgtcgggcgtctggcctgtggcgcgcagctcaagcaggcgatcatccatttcgtc
tcgcgccgcgccatggacatcgacggcctgggcgacaagaccatcgagcaactggtggat
gaaaaactcattggctcgccggccgacctctacaagctaaaatacgaacagatcatcgac
ctggaaggctttgccgacatttccagcaagaaactgatcaccgccatcgaaaacagcaaa
tccccgaccctggcgcgctttatctacgccctgggcattcccgacgtcggcgaggagacc
gccaaggtgctggcgcgctctctggcctccctggagcgcgtgcagaaggccttgccggaa
gtgctgacgtacttgccggacgtgggcctggaagtggcgcatgagattcatagtttcttt
gaagacagtcataaccaggacgtgatcggcgcgctgctgtcgccgcaggaatgcggcctg
caactgcaggatcagggcgacctgagtgccgaattcgccgccagcaccaccttgggcggg
ttgctcgacaagctgcacgtaccgagcgtcggccccggcgcggcgcagaagctggcggac
aaattcgtcacccttgaaggcgtgatcaaggccgactggctggacatgcgccaggccctg
cccgagaaacaagccaaggccgtgcgcgagttcttcgataacgccgacaacgccagccgc
gccctggccatcgagcagcagctcaaagacttcggcatgcattggaacagcgagaagaag
gtcgtcgaaggcttgcctgaggctgggcacacctgggttctcactggctccctggagctg
atgagtcgcgacgtggccaaggaaaaactcgaaagcctcggcgccaaggtggcgggttcc
gtttcggcgaagactcattgcgtggtggcggggccgggtgccggttccaaactggccaag
gccagcgagttgggcttgaaggtattggacgaagaggctttcgtcgccttcctcgccaag
cacaacatcagcgtcgactga
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