Pseudomonas cannabina pv. alisalensis: JGS08_12550
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Entry
JGS08_12550 CDS
T07379
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
pcab
Pseudomonas cannabina pv. alisalensis
Pathway
pcab01501
beta-Lactam resistance
pcab01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
pcab00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JGS08_12550
01503 Cationic antimicrobial peptide (CAMP) resistance
JGS08_12550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pcab03036
]
JGS08_12550
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
pcab02000
]
JGS08_12550
01504 Antimicrobial resistance genes [BR:
pcab01504
]
JGS08_12550
Chromosome and associated proteins [BR:
pcab03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
JGS08_12550
Transporters [BR:
pcab02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
JGS08_12550
Antimicrobial resistance genes [BR:
pcab01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JGS08_12550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-barrel_RND
BSH_RND
RND-MFP_C
HH_MFP_RND
YknX_C
HH_AAEA_pHBA
Beta-barrel_RND_2
BSH_CusB
HH_YBHG
CzcB_C
BSH_CzcB
HH_EMRA
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
QQN24368
LinkDB
All DBs
Position
2765770..2766963
Genome browser
AA seq
397 aa
AA seq
DB search
MSSKIFAKYLMTFTYVIYAAFISLLSGCSEEAPPAAEKPKVSIITVKPRPQSLTTELAGR
TRAFMSAEIRPQVSGIVQQRLFVEGAQVKAGQALYQLDSATYKAALAEAEATLAKSRATL
KSAQATARRDIALAKIDAISQQDKEDAEATLQTSAAEVKVAEADVQTARINLTYTRITSP
INGRIETSTVTPGALVVAQQDTALTTVQQLDPIYVDVTQSTTELLRLKRDLASGALQSNG
EGEARVTLKLDDGSTYNHDGRLQFSGVSVNEGTGTVTLRASFANPDRLLLPGMYVLAVLE
QAQDQNAILIPQKAVNRAASGQTTVLLVEGGKIKQRVVTVDRAVGNEWWVTSGLKAGEQV
VVEGGQKTPVGTEVTVQASETTDSTARTAPATAGKEG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcaagattttcgccaaatacctgatgaccttcacctacgtcatctacgcagct
tttatcagtctgttgagcggttgctcggaagaggcgccacctgctgcggaaaaaccgaag
gtgtcgatcatcaccgtgaaacctcgcccccaatcgctgaccaccgagctggcgggtcgt
acccgcgccttcatgtcggccgagattcggccgcaagtcagcggtatcgtgcagcaacgg
ctgtttgtcgagggcgcccaggtcaaggccggccaggctttgtatcagctcgacagcgcg
acttataaggccgcgctggccgaagccgaggcgacccttgccaagtcccgcgccacgctc
aagtcggctcaggccacagccagacgtgacatagcgctggcgaagatcgacgccatcagc
cagcaggacaaggaagacgccgaggccactctgcagacctctgcggccgaggtgaaagtc
gccgaagccgatgttcagactgcacgcatcaacctgacttacacacgcatcacctcgccg
atcaacggccggatcgagacctcgaccgtcactcccggtgcactggtcgtcgcccagcag
gacaccgcgctgaccacggtccagcaactggacccgatttacgtcgatgtcacgcagtcc
actacggagttgctgcgtctcaagcgcgatctggccagtggcgcgctgcaaagcaacggc
gagggcgaagcgcgagtcaccctgaaactggatgacggcagcacctacaaccacgatggc
cgcctgcaattcagcggcgtcagtgtgaatgaaggcaccggcaccgtgaccctgcgtgcc
agtttcgccaatcctgatcggttattgctgcccggcatgtacgtgctggcagtgctggaa
caggcacaggaccagaacgcgattctgattccgcaaaaggcggtcaatcgcgctgccagc
ggccagaccacggtgttgctggtcgaaggcgggaagatcaagcagcgcgtggtgactgtc
gaccgggcagtgggcaatgagtggtgggtcaccagcgggttgaaagcaggcgagcaggtt
gtggtcgaaggcgggcagaaaacaccggtgggcaccgaagtgaccgtgcaggccagcgag
acaactgactcaaccgccaggacggctcctgccactgccggcaaggagggctga
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