Pectobacterium cacticida: OI450_13880
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Entry
OI450_13880 CDS
T08693
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcac
Pectobacterium cacticida
Pathway
pcac03030
DNA replication
pcac03410
Base excision repair
pcac03420
Nucleotide excision repair
pcac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OI450_13880 (ligA)
03410 Base excision repair
OI450_13880 (ligA)
03420 Nucleotide excision repair
OI450_13880 (ligA)
03430 Mismatch repair
OI450_13880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcac03032
]
OI450_13880 (ligA)
03400 DNA repair and recombination proteins [BR:
pcac03400
]
OI450_13880 (ligA)
Enzymes [BR:
pcac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OI450_13880 (ligA)
DNA replication proteins [BR:
pcac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OI450_13880 (ligA)
DNA repair and recombination proteins [BR:
pcac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OI450_13880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OI450_13880 (ligA)
MMR (mismatch excision repair)
DNA ligase
OI450_13880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OI450_13880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RUBY_RBDX
DZR_2
Motif
Other DBs
NCBI-ProteinID:
UYX06009
LinkDB
All DBs
Position
complement(3025739..3027793)
Genome browser
AA seq
684 aa
AA seq
DB search
MKPVKKAPSEVDAAAQRAATLRRVLRHHEYQYHVEDAPEIPDVEYDKLMQELKALETDYP
ELVTSDSPTQRVGAAPLAAFEPVRHEVPMLSLDNVFDEESYLAFSKRISDRLKNEGELTF
CCELKLDGLAVSLLYEDGILVQAATRGDGATGENITSNIRTVGAIPLRLEGDNIPRRIEV
RGEVFMKHSGFEKLNEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLV
EGGELPASHWERLMLFKAWGLPVSDKIQRCTGSDEVLAFYRHIEQTRSSLGFDIDGVVVK
VDSLALQERLGFVARAPRWAVAFKFPAQEQLTWLRDVEFQVGRTGAITPVARLEPVAVAG
VIVSNATLHNADEIERLGLQIGDRVIVRRAGDVIPQIVGVVVAERPETAQPIVFPSTCPV
CGADVERVEGEAVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVKT
PADLFRLNVEILTKLERMGPKSALNLVNALEKAKVTTLARFLYALGIRDVGEATAANLAA
HFGSLEALFAADEEALLAVPDVGKVVAAHVRHFLEEAHNRIVIHELTDPAGINIHWPEVQ
VVNAETIDSPFAGKTVVLTGSLSVLSRDEAKDRLAALGAKVSGSVSKKTDMVIAGEAAGS
KLAKAQELGIPVIDEAEMIRLLGD
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccagtgaagaaagcaccatccgaagtggatgcagccgcacagcgagcagcgacg
ttgcgtcgggtcttacgtcatcacgaataccaataccacgttgaagatgcgcccgaaatt
cctgatgtcgaatacgacaaactcatgcaggaactaaaggcattggaaaccgattacccg
gaactggtgaccagcgattctcctacgcagcgcgtaggcgcggcaccgttggcggcattt
gaaccggtgcgccatgaagtgccgatgttatcgctggataatgtcttcgatgaagaaagc
tatctggcgttcagtaaacggattagcgacaggctaaaaaatgaaggggaactgacattt
tgttgtgaactcaagctggatggcttggcggtcagtttactttatgaagacgggattctg
gtgcaggcggctacgcgtggcgatggcgcaaccggggagaacatcaccagtaatattcgc
accgtgggagcgatcccgttgcgtctggaaggcgacaacattccccgccgcattgaagtg
cgtggcgaagtgtttatgaagcacagcggctttgaaaagctgaatgaagaagcccgtcga
acgggcggtaaagtctttgctaatccccgcaacgctgcggcgggatcgctgcgccagctt
gatccgcgaattacggctaaacgcccgctaacatttttctgctatggcgttggtctggtg
gaggggggcgaattgccagccagccactgggaacgactgatgctgttcaaagcatggggg
ttgccagtgagcgataaaattcaacgatgcaccggttcggacgaggtcctggcgttttac
cgccatattgaacagactcgcagttcgttaggctttgatattgatggcgtcgtcgtcaaa
gtagattctctggcattacaggaaagattagggtttgttgcccgtgcgccgcgttgggcg
gtggcctttaaattccccgcgcaggaacaactgacgtggctgcgtgatgtggaatttcag
gttgggcgaaccggcgcgattaccccggtcgcgcgtctggaacccgtggccgtggcgggg
gttattgtcagtaatgctacgctgcataacgcggacgaaattgagcgactcggtttgcaa
ataggcgatcgcgtcattgtgcgtcgggcaggggatgtgatcccgcaaattgttggtgtg
gtagtcgccgaacggcccgaaacggcgcagccgattgtgttcccttctacctgccccgtg
tgcggcgcggatgttgaacgcgtagaaggggaagccgtcacgcgttgcactggtggtttg
atctgtggcgcccaacgtaaagaggcgttgaagcattttgtgtctcgccgcgccttagac
gtggaaggtatgggcgataagattatcgaccaattggtggaaaaagagtatgtcaaaacg
ccagccgatctgtttcgtctgaacgtcgaaatactgacgaaattggagcgtatggggccg
aaatctgcgctaaatctggtaaatgccctggaaaaggcaaaagtgaccacgctagcgcgc
ttcttgtatgcgttggggatccgtgacgttggcgaagcgacggcagctaatctggccgcg
cattttggctcactggaagcgcttttcgccgccgacgaagaagcactactcgccgtgccg
gatgtcggtaaggtcgttgccgcacatgtgcggcatttcctggaggaggcgcataaccga
atcgtgattcatgaattgaccgacccagcagggatcaatattcactggccagaggttcag
gtcgtcaacgctgagacgatcgacagtccctttgccgggaaaacagtggtgttgacagga
tcgctgagtgtcctatctcgtgatgaagctaaggatcgtctcgccgcattgggcgctaaa
gtcagtggcagcgtctcgaaaaaaaccgatatggtgattgcgggtgaagccgcaggatct
aagctggcaaaggcgcaggaattggggattcccgtgatcgatgaagcggagatgatccga
ttattgggagactaa
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