Pectobacterium cacticida: OI450_18165
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Entry
OI450_18165 CDS
T08693
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcac
Pectobacterium cacticida
Pathway
pcac03030
DNA replication
pcac03410
Base excision repair
pcac03420
Nucleotide excision repair
pcac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OI450_18165 (ligB)
03410 Base excision repair
OI450_18165 (ligB)
03420 Nucleotide excision repair
OI450_18165 (ligB)
03430 Mismatch repair
OI450_18165 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcac03032
]
OI450_18165 (ligB)
03400 DNA repair and recombination proteins [BR:
pcac03400
]
OI450_18165 (ligB)
Enzymes [BR:
pcac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OI450_18165 (ligB)
DNA replication proteins [BR:
pcac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OI450_18165 (ligB)
DNA repair and recombination proteins [BR:
pcac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OI450_18165 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OI450_18165 (ligB)
MMR (mismatch excision repair)
DNA ligase
OI450_18165 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OI450_18165 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
DUF3701
Motif
Other DBs
NCBI-ProteinID:
UYX06783
LinkDB
All DBs
Position
complement(3992261..3993949)
Genome browser
AA seq
562 aa
AA seq
DB search
MWLRNSILWIVIVASGISHFAAFGACPDWDNTRSHKEIEALRQQLERWDDAYYAKGTSPV
ADDIYDQLREQLNQWVSCFQPQTTIPIPLPINGKQLHPVAHTGLKKMSDRRLLKLWIDAR
KDVWIQPKVDGVAVTLFYRHGKLVSAVSRGNGLQGEDWTEKVRLIPGIPHLLTEAPRSLI
LQGELFLKMTDHRQKTQGGVNARSVVAGELRRHQPSPVLSQIGLFVWEWPDGPTTMPERL
EKLTKMGFAATAAYTHAIASFTDAEKWRQHWYRSPLPFVTDGVVIRQAKEPQGRYWRATS
ADWAIAWKYPPVHHVTEVADVAFSVGRTGKIAVVLKLTPMKLDDKLIRRVSVGSLSRWKQ
WDVLPGDRVSVSLAGQGIPRLDNVVWRSAERPDIASPDERDFHALSCFHYSMVCHQQFLA
RLVWLSGEHGLNLAGVSEGVWSRLLQHNLLENVLSWLSLTKAQINAINGIGDRRAEDIYK
RLQSTRQVPLSQWLLALGVPIPRSAISALDQVDWLALQQRTAQQWRQFSGIGERRAEEIM
AFIRHPIIIEFIARLAREGIYN
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgtggttgagaaacagcatattatggattgttatcgttgctagcggtatcagccatttt
gcggcgtttggcgcgtgtcctgattgggacaacacgcgatcccataaagaaattgaagca
ttgcgtcagcaattagaacgctgggatgacgcgtattacgccaaaggtacaagcccggtc
gcggacgatatttacgatcaactgcgagaacaattaaatcaatgggtgagctgttttcaa
ccccaaacgacgatccccatacccttaccgattaatggcaaacaacttcaccccgtcgcc
cataccggattgaaaaaaatgtccgatcgcaggctactgaagttatggattgatgcgcgt
aaggatgtctggattcagccgaaagtagacggtgtggccgtcacgctgttttatcggcat
ggcaaacttgtctcagcggttagccggggtaatggcttgcagggcgaagattggacggaa
aaagttcgtctaattccgggaattccccatttgttaacggaggctcctcgctctctcatc
ttacaaggcgagcttttcctgaagatgaccgatcatcgacagaagactcaaggcggtgtt
aatgcacgttcggttgtggctggagaattgcgtcgccatcaaccatcgccagtattatcg
cagataggcctatttgtctgggagtggcccgatggcccaacgacgatgcctgaaagactt
gagaaattgacgaaaatggggtttgccgcgacggcggcttatacacatgctattgcgtca
tttacagacgctgagaaatggcgacaacactggtatcgcagtccgctaccatttgttacg
gacggcgtggtaatccgacaggcaaaagaaccgcaagggcgctattggcgtgccacatca
gctgactgggcgatcgcctggaaatacccacccgtacatcacgttacggaagtagccgat
gtcgcgttttctgttgggcgcacaggcaagattgcggtagtgctgaaactgacccctatg
aaattggatgacaagttgatccgtcgtgtgagtgtcggttccctgtctcgttggaagcaa
tgggatgtgctgcccggcgatagggttagcgtcagcttggcagggcaagggatccctcgg
ttggataacgtggtatggcgtagcgctgagcggcctgacatcgcttctcctgatgaacgt
gatttccatgcgttgagttgttttcactatagtatggtttgccaccagcaatttctggcg
cgcttggtttggctaagtggagagcacggactcaatctggccggtgtgagtgaaggcgta
tggtcgcgtttgttgcaacataatttactggaaaacgtattgtcgtggttatcgctgact
aaagcgcagattaatgcaatcaatggcataggcgataggcgggcagaagatatttataag
cgcttgcagtcaacacgacaggtgccgctgtcccagtggctacttgcgctaggcgttccg
attcctcgttcggcaattagtgcgttggatcaggtagattggctggcattacagcagcgg
acggcgcaacagtggagacaattttctggtattggagaacggcgtgccgaagaaattatg
gcattcatcaggcaccctattattatagaattcatcgctcgcttagcgcgcgagggtata
tataactga
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integrated database retrieval system
