Physeter macrocephalus (sperm whale): 102978197
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Entry
102978197 CDS
T06011
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
102978197 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcad03000
]
102978197 (KDM2B)
04121 Ubiquitin system [BR:
pcad04121
]
102978197 (KDM2B)
03036 Chromosome and associated proteins [BR:
pcad03036
]
102978197 (KDM2B)
Enzymes [BR:
pcad01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
102978197 (KDM2B)
Transcription factors [BR:
pcad03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
102978197 (KDM2B)
Ubiquitin system [BR:
pcad04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
102978197 (KDM2B)
Chromosome and associated proteins [BR:
pcad03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
102978197 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
102978197 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
F-box-like
JHD
F-box
JmjC
Cupin_8
PHD
AppA_SCHIC
DUF2794
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
102978197
NCBI-ProteinID:
XP_054936692
UniProt:
A0A9W2WC09
LinkDB
All DBs
Position
19:complement(18337320..18401648)
Genome browser
AA seq
1089 aa
AA seq
DB search
MCMRASGGAKVWEHLPTLDISYVELDTGLLRLVPLYCLMSVKGCFTDFHIDFGGTSVWYH
VFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWI
HAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYC
VTQRSYLTQEYQRESMLIDAPRKPSIDGFSSDSWLEMEEESCEQQPQEEEKEEEGEEEEE
GADKMPKAPTDGPASPTSTPSEDQEAPGKKPKAPAMRFLKRTLSNESEDSVKSATVPIDY
PKTPTGSPATEVSAKWTHLTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKN
VLKEHADDDPSLAITGVPVVTWPKKTPKGFPGGAVVKNTPANAGDTPVLPHTAVCLVCGE
AGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGK
TGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRAECEEAPRRRSDEHPKKVPP
DGILRRKPDDVHLRRKRKYEKPQELSGRKRASTLQTSPGSSSHLSPRPPLGSSLSPWWRS
SLTYFQQQLKPGKEDKLFRKKRRSWKNAEDRMALANKPLRRFKQEPEDDLPEAPPKTRES
DHSRSSSPTAGPSTEGAEGPEEKRKVKMRRKRRLPNKELSKELSKELNQEIQKTESSLAH
ENHQPIKSEPESENEEPKRPLGLCERPPRFSKGPNGTPRELRHQLGPGLRSPPRVISRPP
PSVSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSYLSHQDLCVCMR
VCRTWNRWCCDKRLWTRIDLNHCKSITPLMLSGIIRRQPVSLDLGWTNISKKQLSWLINR
LPGLRDLVLSGCSWIAVSALCSSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMD
NRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLHLSYCNHVTDQSINLLTAVGTTTR
DSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQV
EEKLLQKLS
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgtgtatgcgggcctccggaggtgccaaggtgtgggagcatctgcctactctggacatt
tcatacgtggaattagacactggtcttttacggctggtacccttgtactgtctgatgagc
gtgaaaggttgtttcactgacttccacatcgactttggaggcacttccgtttggtaccat
gttttccggggtgggaagatcttttggctgattcctccaaccttgcacaatttggcactg
tacgaggagtgggtgctgtcaggcaaacagagcgacatcttcctgggagaccgtgtggag
cgatgccaaagaattgagctgaaacagggctacacgtttttcatcccttccggctggatc
catgcagtctacacccccgtagactctctggtgttcggcggaaacattctgcacagcttc
aacgtgcccatgcagctgcggatctacgagatcgaggacagaacgcgggtgcagcccaaa
ttccgttaccccttctactatgagatgtgctggtatgtcttggagagatacgtgtactgt
gtgacccagcggtcctacctcactcaggaataccagagagaatcaatgcttattgatgcc
ccaagaaagcccagcatagacggcttctcatctgattcctggctggagatggaggaggag
tcctgtgagcagcagccccaggaggaggagaaggaggaggagggggaggaagaggaggag
ggtgcagataagatgcccaaagctcccaccgatggccctgcctcgcccaccagcacccct
tccgaggaccaggaggcccctgggaagaagcccaaagcccctgccatgcggttcctcaaa
aggactttgtcaaatgagtcagaagacagcgtgaagtccgccacggtgcccatagactac
cccaagacgcccaccggctctcccgccaccgaggtctctgccaaatggacccacctcacc
gagtttgaactgaagggcctgaaagctctggtggagaaacttgaatccctcccggagaac
aagaagtgtgttcctgagggcatcgaggacccccaggcactcctggagggtgtgaagaat
gtcctgaaggagcacgcggatgacgaccccagtctggccatcactggggtccctgtagtc
acttggccaaagaagactccaaagggctttcctggtggcgcagtggttaagaatacacct
gccaatgcaggcgacacgccagtgctgccccacactgccgtgtgtctggtgtgtggcgag
gcaggaaaagaggacacggtggaagaggaagaaggcaagtttaacctcatgctcatggag
tgctccatctgcaacgaaatcatccaccctggatgccttaagattaaggagtcagagggc
gtggtcaacgatgagcttccaaactgctgggagtgtccaaagtgtaaccacgccggcaag
accgggaaacaaaagcgtggccctggctttaagtacgcctcaaacctgcccggctccctg
ctcaaggagcagaagatgaaccgggacaacaaggaggggcaggagcccgccaagcggagg
gctgagtgtgaggaggcgccccggcgcaggtcagacgagcaccccaagaaggtgccccct
gacggcatcctgcgccgaaagcccgacgacgtgcacctgaggaggaagcggaaatacgag
aagccccaggagctgagtggacgcaagcgagcctcgacgcttcaaacgtcccccggttcc
tcctctcacctctcgccgaggccccctctaggcagcagcctcagcccctggtggagatcc
agtctcacttacttccagcagcagctaaaacccggcaaagaagataagcttttcaggaaa
aagcggcggtcctggaagaacgctgaggaccgaatggctctggccaacaagcctctcagg
cgcttcaagcaggagccggaggacgacctgcccgaggcgccccccaagacgagggagagc
gaccactcccgctccagctcccccaccgctggccccagcacggagggggcggagggcccc
gaggagaagaggaaggtgaagatgcgccggaagcggcgactccccaacaaggagctgagc
aaggagctaagcaaggagctcaaccaggagatccagaagacggagagcagcctggcccac
gagaaccaccagcccatcaagtcggagcctgagagcgagaacgaggagcccaagcggccc
ctgggcctctgtgagcgccctccccgcttcagcaaggggcccaacggcaccccccgggag
ctgcggcaccagctggggcccggcctgcgcagcccaccccgagtcatctcccggccccct
ccctccgtgtccccgcccaagtgcatccagatggagcgacatgtgatccggccgcccccc
atcagccccccgcccgactcgctgcccctggatgatggggcggcccacgttatgcacagg
gaggtgtggatggccgtcttcagctacctcagccaccaagacctgtgtgtctgcatgcgg
gtctgcaggacctggaaccgctggtgctgtgataagcggttatggacccgcatcgacctg
aaccactgcaagtccatcacacccctgatgctgagcggcatcatccggcgacagcctgtc
tccctggacctcggctggaccaatatctccaagaaacagctgagctggctcatcaaccgc
ttgcctgggctccgagacttggtgctgtcaggctgctcatggatcgcagtctcagccctc
tgtagctccagttgtccgctgctccggaccctggatgtccagtgggtagaaggactaaag
gacgcccagatgcgggatctcctgtccccgcctacagataacaggccaggtcagatggac
aatcggagtaagctccggaacattgtggagctgcgtctggccggcctggacatcacagac
gcctccctgcggcttatcattcgccacatgcccctgctctccaagctccaccttagttac
tgtaaccacgtgactgaccagtccatcaacctgctcaccgctgtgggcaccaccacccga
gactccttaaccgaaatcaacctgtcagactgcaataaggtcactgaccagtgcctgtcc
ttcttcaaacggtgtgggaatatctgtcatattgacctgaggtactgcaagcaagttacc
aaggaaggctgtgagcagttcatagctgaaatgtctgttagcgtccagttcgggcaagtg
gaagaaaaactcctgcaaaaactgagttag
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integrated database retrieval system
