KEGG   Physeter macrocephalus (sperm whale): 102979164
Entry
102979164         CDS       T06011                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
pcad  Physeter macrocephalus (sperm whale)
Pathway
pcad03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pcad00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102979164 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pcad03041]
    102979164 (SMNDC1)
Spliceosome [BR:pcad03041]
 Complex A
  U2 snRNP components
   U2 related factors
    102979164 (SMNDC1)
 Complex B
    102979164 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    102979164 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR
Other DBs
NCBI-GeneID: 102979164
NCBI-ProteinID: XP_007114803
Ensembl: ENSPCTG00005014081
UniProt: A0A2Y9F4C6
LinkDB
Position
20:complement(64996339..65019735)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDNFASTQPTHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaggatctagcaaagcaactggcaagctacaaagctcaactccagcaagttgaa
gctgcactctctggaaatggagaaaacgaagatttgctaaaattaaagaaagatttgcaa
gaagttatagaactaaccaaagaccttctgtcaactcaaccttctgaaacgttggcaagt
tcagacaattttgcttctactcagcccactcattcatggaaagtaggagacaagtgtatg
gcaatctggagtgaagatggacagtgttatgaagcggagattgaggagatagatgaagaa
aacggcactgctgcaatcacttttgctggctatggcaatgctgaagtgactccactgttg
aacctcaagcctgtagaagaaggaaggaaggcaaaggaggacagtggcaacaaacccatg
tcaaaaaaagaaatgattgcccagcagcgtgaatataaaaagaagaaagctttgaaaaaa
gcacagagaataaaagaacttgaacaagaaagagaggaccagaaggtgaaatggcagcag
ttcaacaacagagcctattctaaaaacaaaaaaggccaggtaaagaggagtatttttgct
tcacctgagagtgtaactggcaaagttggagtaggaacttgtggaattgctgataaacct
atgacacagtatcaagatacctctaaatacaatgttaggcatttgatgcctcaataa

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