Physeter macrocephalus (sperm whale): 114483896
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Entry
114483896 CDS
T06011
Symbol
SMG6
Name
(RefSeq) telomerase-binding protein EST1A
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
pcad
Physeter macrocephalus (sperm whale)
Pathway
pcad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcad00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114483896 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcad03019
]
114483896 (SMG6)
03032 DNA replication proteins [BR:
pcad03032
]
114483896 (SMG6)
Messenger RNA biogenesis [BR:
pcad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
114483896 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
114483896 (SMG6)
DNA replication proteins [BR:
pcad03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
114483896 (SMG6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
DUF5539
Motif
Other DBs
NCBI-GeneID:
114483896
NCBI-ProteinID:
XP_028354106
Ensembl:
ENSPCTG00005006819
UniProt:
A0A455CA58
LinkDB
All DBs
Position
14:92406639..92504604
Genome browser
AA seq
1234 aa
AA seq
DB search
MAEGLERVRISASELRGILATLAPQAGSRENMKEPRQRKDNRRPDLEIYKPGLSRLRNRP
KIKEPSGSQEFKDEIVNDRDSSAVGSGTQLIKDVCKDSPQQNGPVDPENTRAQESFPRTV
GQEDRSLRIIKRTKKPDMQIYQPGRRLQTVTKESTSKVDEEEILNQVEQLRVEEDACRGN
VKEEVVNKPDKEEAEKSLSGDRIRAAKGEKGKRVEKGEGVKKANDDPAQGKPGSAKRYSR
SDKRRNRYRTCSTSSAGSNNSAEGTGLTDNGSRRRRQDRTKERPRLKKQVSMSSTDSLDE
DRIDESDGPRRSSERKKHLERSWSGCGEGEQKSNGKENRGTLRVTFDAETMNKDSPMVRS
AREDSDRLKSDNGSSSGGKVSEKQESKNLRQELRGRGRGILILPAHTTLSVNSAGSPEST
PLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDDEVSPTSW
GDSRQAQASYYKFQNSDNPYYYPRTPGPTSQYPYTGYSPLQYPVGPTNGVYPAPYYPGYP
TPSGQYVCSPVPASTMSPEEMEQHMRNMQQQELHRLLRVADNQELQLSNLLSRDRISPEG
LEKMAQLRAELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKDPNVENPE
QIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYALISAQRC
MICQGDIARYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYY
YLRSLAASNPILTARESLMSLFEETKRKAEQMEKKQHEELELSPDQWRKGKKSTFRHVGD
DTTRLEIWIHPSHPQSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIG
METFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEECRSVIQ
EQAAALGLAMFSLLVQRCTYLLKESAKAQLSCPEEEEDQDDIKVSSFVPDLKELLPSVKV
WSDWMLGYPDTWNPPPASLDLPSQVAVDVWSMLADFCNILTAVNQSEVPLYKDPDDDLTL
LILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVSPRPNIPPHSPLLLILQTFLFLGSFLCK
RNMIKSLRRVLRENIDLLAADIQLCVLKKKALSTSFGVCVRSLACCIYDHFLTCLNSAAC
VGSALTQLQMVCIMLKAPSFLPPFILPPSHKTLH
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggttggagcgtgtccggatctccgcgtcggagctgcgagggatcctggcc
actctggctccgcaggccgggagcagagaaaacatgaaggagcccaggcagcgcaaagat
aacaggcgcccagatctggaaatctataagcctggtctttcccgactaaggaacagacct
aaaatcaaggaaccctctgggagtcaagaatttaaggatgaaattgttaatgacagagat
tcttctgctgttggaagtggtacacagctcattaaagatgtctgcaaagacagcccacag
caaaatggtcctgtagacccagaaaatactcgggcacaggagtcttttcctaggactgtt
ggacaagaggatcgaagcctaagaattatcaagagaacaaagaaacctgacatgcagatc
tatcagcctggaaggcgtttgcagactgttaccaaagaatcgaccagcaaggtggatgag
gaagaaatcctcaaccaggtagaacaactgagagtagaggaagatgcatgtaggggaaat
gtgaaagaagaggttgtgaacaagccagacaaagaggaggcagaaaagagcctaagtggt
gacagaataagggctgcaaagggggaaaaaggaaagagggttgaaaaaggggagggcgtg
aagaaggcgaatgatgacccagctcaggggaagccaggttctgcgaagcgctactcccgc
tcagacaaacgaaggaaccgctaccgcacttgcagtaccagctcagcgggtagcaacaac
agtgccgaggggactggcctgactgataatggaagtcgccgccgtcgccaagatcggacc
aaggagagaccacgactgaagaaacaagtatcgatgtcctcaactgactccttggatgag
gacagaattgatgagtctgatgggccacggaggagctcagaaaggaagaaacatttagaa
agaagctggtctggctgtggggagggagagcagaaaagcaatggtaaagaaaatcgaggc
actcttcgcgttacttttgatgcagaaaccatgaacaaagattcccccatggtgaggtca
gccagggaggattcggataggttaaagtcagacaacggctcgagcagtgggggcaaagtc
tctgagaagcaggagtccaaaaacctgagacaagaacttcggggtcgtggccgtggcatt
ctgattctgcctgcccataccaccctgtctgtcaattcagctggttctccagagtctacg
cctttgggacctcggcttttatttggatctggtagtaagggatctcggagttggggccga
ggaggcaccacccgacgattgtgggacccaaacaatcctgatcagaaacctgctctaaag
agccagacaccgcagctacatttcttggacactgatgatgaagtcagccctacctcttgg
ggtgactcacgccaggcccaagcatcttactataagtttcaaaactcagacaacccttat
tattacccccggacaccaggccccacctcccagtatccttacacaggctatagccctctg
cagtacccggtgggccctacaaatggtgtgtacccagcgccttactacccaggctaccca
actccatcaggacagtatgtctgtagccccgtccctgccagcaccatgagtcctgaggag
atggagcaacacatgaggaacatgcagcaacaggaactacatcggcttctccgggtggct
gacaaccaagaactgcagctcagcaacctgctgtccagggaccgcatcagtcctgagggc
ctggagaagatggctcagctcagagctgaactgctgcagctatatgagcgctgtattcta
ttagatattgagttctctgataatcagaatgtggatcagatcctgtggaagaatgctttc
tatcaggtgattgagaagttcaggcagcttctcaaggatccgaatgttgagaacccagaa
cagattcggaacagacttttggagctcttggatgagggtagtgacttctttgatagtttg
cttcagaagctgcaggttacttacaagttcaagctggaggactacatggacggtcttgcc
atccgcagcaagccattacgaaagacagtaaaatatgccttgatcagtgcccagcgatgt
atgatttgccaaggagatattgccaggtatcgggagcaagccaatgacacggcaaactac
gggaaagcacgcagctggtacctgaaagcccagcacattgctcccaagaatgggcgcccc
tataaccagttggctctgctggcagtatatacgaggaggaagcttgatgccgtctattac
tatctgcgcagtctggctgccagcaaccccatcctgactgccagggagagtctcatgagc
ttgtttgaagagaccaaacggaaggcagaacagatggaaaagaagcaacacgaggaattg
gaactgagccctgaccaatggcggaaaggaaagaaatccactttccggcatgttggagat
gacaccactcgcctggagatctggattcatccatcccatccccagtcctcccagggcact
gagtctgggaaggattctgagcaggagaatgggctgggcagcctgagccccagtgatctg
aacaaaaggttcatcctcagttttctccatgcccatgggaagctgtttacccggattggg
atggagacattccctgcagtggctgagaaggtcctcaaggagttccaggtgttgctgcag
catagtccctctcctattggaagtacccgcatgctgcagcttatgaccatcaacatgttt
gctgtacacaactcccaactgaaagactgcttctcggaggagtgtcgctccgtgatccag
gagcaagccgcagccctgggcctggccatgttttctctcctggtgcagcgctgcacctac
ttactgaaggaatcagccaaagctcagctgtcctgtcctgaggaagaggaggatcaagat
gacatcaaggtgtcttccttcgtcccggacctgaaggaactgctccccagtgtgaaagtc
tggtcagactggatgctcggctacccagacacctggaatcctccgcctgcatccctggat
ctgccctcacaggttgctgtggatgtctggtcgatgctggctgatttctgtaacatactg
actgcagtgaatcagtctgaggtgccactgtacaaggacccggacgatgacctcaccctc
cttatcctggaagaggatcggcttctctcgggctttgtacccttgctggctgcccctcag
gacccctgctacgtggagaaaacctcggataaggtcagccccaggccaaacatccctccc
cattcacccctcctcttaattctccagacctttttattcttgggaagttttttgtgcaaa
cggaacatgattaagtcattgagaagggtgttaagggaaaatatcgaccttttagccgct
gacatccagctctgcgtcctgaaaaaaaaagccctctcgacttcctttggtgtgtgtgtg
cgctcactggcatgttgtatatacgatcatttcctcacttgtttaaatagtgcagcttgt
gttggcagtgctctcactcagctccaaatggtttgcatcatgcttaaagcaccctccttc
ctcccccctttcatccttccccccagccacaaaactctgcactag
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integrated database retrieval system
