Pituophis catenifer annectens (San Diego gophersnake): 139309066
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Entry
139309066 CDS
T11059
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
139309066 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcae03400
]
139309066 (LIG4)
Enzymes [BR:
pcae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
139309066 (LIG4)
DNA repair and recombination proteins [BR:
pcae03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
139309066 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
BRCT_2
DNA_ligase_IV
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
139309066
NCBI-ProteinID:
XP_070789253
LinkDB
All DBs
Position
Unknown
AA seq
908 aa
AA seq
DB search
MASVPTSHSSSKLTVASKVPFADLCSTLERIQKCKSRSDKTRYFKDFLDSWRKFHDALHK
NEKDVIDSFYPAMRLIFPLLERERMAYGIKETMLAKMYIELLNLPKDGKDALNLLHFRTA
TGSQGNVGDFAMIAYFVLKSRCINKGQLTIQQVNDHLDSVSNNNAAKKKELVKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTLFSIFHPDAAELYNVTTDLEKVCRQLHNPSVSL
SDASITLFSAFKPMLASIASVRQIEKQMNNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
YDYTQQFGASPLEGSLTPFIHQAFKNIQNCILDGEMMAYNPTTQTFMQKGSKFDIKRMVD
DSELQTCFCVFDVLMVNDQKLGHEMLSTRYNILNTIFTSIPGRVQIVSRTEANTQKDVVD
ALNEAIDNREEGIVIKDPTSIYKPDKRGEGWLKIKPEYVSGLMDELDLLIIGGYWGKGLR
GGMISHFLCAVAETPLPGEKPSKFHSICRVGSGCTMKELYDLGLKLATYWKKYDRKVPPC
NILCSVEKPQVYIDPCNSVIVQIKAAEIVSSDMYKTECTLRFPRIERIREDKEWYECMTL
DLLEQLRSKAAGKLATKHLDVVEDEPQEKKRKTLAKIKKAIGLMDHFKAPDLSKINKVSN
IFEDVEFCIMTGTQNYSKYALESKIAEYGGSIVQNPGPDTYCVVAGTENVRVKNIISSNN
YDVVRTEWLLQCFQAGKFVPWQPAFMIHMSPETKQHFACEYDTYGDSFTADTDPLELKAV
FSRINTSEKISQDVIADIEARYSWESSLSMFRQQTIYLSLFDEMSNSKDRINQTRCLTVE
LILRFHGAKVVSQLEEGVSHVISGDNSDLKKIKAIRRTFKKKFKIVSEQWIKDSVKDGEL
QNENLYIM
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagtccccacttcacattcatcttccaagctaactgtagcatcaaaagtccca
tttgcagatctctgttcaacattagaacgcattcagaagtgcaaatctcgatcagataaa
acaagatatttcaaggattttctagattcctggaggaaatttcatgatgctcttcataaa
aatgagaaggatgtgatagattctttttatcctgcaatgaggctcatttttccactgttg
gaaagagagaggatggcttatggaattaaagaaacaatgcttgctaagatgtatattgaa
ttgctaaatttacccaaagatggaaaagatgctttaaatcttttacattttcgaacagcc
actggctcacaaggaaatgttggagactttgctatgattgcgtactttgttttaaaatca
agatgcatcaacaaaggtcaactgaccatacaacaagtaaatgatcatctagattctgtt
tctaataataatgctgccaaaaagaaggagctagttaagaagagccttcttcaattaata
actcagagctcagcactagaacagaagtggttgatcaggatgatcataaaggatttgaaa
cttggtgtcagccaacaaaccttattttctattttccatcctgatgctgcagaattgtac
aatgtcacaacagatttggaaaaggtttgtaggcagctgcataatccttcggtatcactt
agcgatgcttctattacattattttctgcctttaaaccaatgcttgcttctattgccagt
gtgcgccaaattgagaaacaaatgaataatcagactttttacatagagaccaaattagat
ggtgaacgaatgcagatgcacaaagatggagatgtttacaaatatttttccagaaatgga
tatgattatactcagcagtttggtgcttctcccctcgaaggttcattgactcctttcatt
catcaggcctttaaaaatattcaaaactgcattctggatggtgaaatgatggcctataat
cctaccacccagacttttatgcagaaaggaagcaagtttgacatcaaaaggatggtggat
gattctgaattacaaacatgcttctgtgtatttgatgttcttatggtcaatgaccaaaag
ttgggtcatgaaatgctgagcacaagatacaacatattaaatacaatttttacatcaata
cctggtcgagtacagattgtttctagaactgaagcaaacacacagaaagacgtagtagat
gccctaaatgaagccattgataacagagaagaaggaattgtaataaaagaccccacatca
atttacaagccagataagcgtggggaaggatggctgaagatcaagccagaatatgtcagt
gggttgatggatgaactggaccttttaattattggaggctactggggtaaaggtcttcgt
ggtggcatgatatctcattttttatgtgcggttgctgagactcctttgcctggtgaaaaa
ccatctaaattccattccatttgtcgtgttggttctggttgcactatgaaagaactctat
gatcttggcttgaaattagccacatattggaaaaaatatgataggaaggttccaccttgt
aatatcttatgtagtgttgagaagcctcaagtctatattgatccttgtaattcagtgatc
gttcagattaaagctgctgagattgtgagtagtgatatgtataaaacagaatgcacatta
cgttttccacgcattgaaagaataagggaagataaagaatggtatgaatgtatgactctt
gaccttctagaacaactcagaagtaaagctgctgggaagcttgcaacaaagcaccttgat
gtagttgaggatgaaccacaagaaaagaagcgtaaaactctggcaaaaattaaaaaagca
attggtttaatggatcattttaaagcacccgatctttctaaaataaacaaagtttctaat
atttttgaagatgttgagttttgtattatgactgggacacaaaattattcgaagtatgcc
ctggaaagcaaaatagcagaatatggtggcagcatagttcaaaatcctgggccagatact
tactgtgttgtggcaggtactgagaatgttagagtgaaaaatattatttcttccaacaat
tatgatgttgtgagaaccgaatggcttttacagtgttttcaagctggaaagtttgttcca
tggcagcctgcttttatgattcacatgtctcctgaaacaaagcaacattttgcttgtgaa
tatgatacttatggtgatagtttcacagctgatactgatccactagagttgaaggcagtg
ttctcaagaattaatacctctgaaaagatttctcaggatgtgattgctgacatagaagcc
cgttattcttgggaaagttccctaagtatgttcaggcaacaaaccatttacctaagtctt
tttgatgaaatgagcaattcaaaggacagaataaatcaaaccagatgtttaaccgtagag
ttgatacttcgctttcatggagcaaaagtagtgtcacagcttgaggaaggtgtatcccat
gtaatcagtggagataattctgatttgaagaaaataaaagccatcagaaggacatttaag
aaaaagtttaaaattgtgtctgagcaatggataaaggattctgtaaaagatggagaatta
caaaatgaaaacttgtacataatgtaa
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