KEGG   Pituophis catenifer annectens (San Diego gophersnake): 139319026
Entry
139319026         CDS       T11059                                 
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
pcae  Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04115  p53 signaling pathway
pcae04210  Apoptosis
pcae05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pcae00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    139319026 (APAF1)
   04115 p53 signaling pathway
    139319026 (APAF1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    139319026 (APAF1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR3_2nd APAF1_C Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WDR55 EIF3I Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_CAF1B_HIR1 NB-ARC WHD_APAF1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_EML WDR90_beta-prop_4th Beta-prop_TEP1_C NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_WDR41 CARD WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_Aladin RMC1_N Beta-prop_Vps41 Beta-prop_NWD2_C WD40_like Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_VPS8 CARD_2 eIF2A Beta-prop_NUP159_NUP214 WD40_RFWD3 BBS2_Mid AAA_16 nSTAND6 AAA_22 Beta-prop_Nup120_160 ATPase_2 AAA_18
Other DBs
NCBI-GeneID: 139319026
NCBI-ProteinID: XP_070802763
LinkDB
Position
Unknown
AA seq 1247 aa
MDERARSYLLQNRQALETDIKTSYIMDHMVADDTLTVVEEEKVKAQTTQKERASMLLKLI
IAKDNYAYISFYNALQQEGYKDLAALLQDGLPFISPSNKTNSENGITSYVKTTLCEGGVP
QRPVVFVTRPELLKKIQQKLCRLRNDPGWVIIYGMAGSGKSVLAAETLRNHNLLKDCFPG
GVHWVSVGKQDKAGLLMKLQNLCLKLDKDFTYSQRPPFNIEEAKDRLRLLLLRTSPRSLL
VLDDIWDSWVLKAFDNQCQILITSRDRSVADSVTGNKYEVSVESGLAHEKALEILSLFVN
MKVTELPEKADHIVRECKGSPLVVSLIGALLQVFPNRWEYYLRQLQNKQFKRIRKSSSYD
YEALDEAMSISVDMLPENFKGYYRDLSVLPKDVKVPSKVFCILWDMEIEEVEDILHEFVN
KSLLFCDRNGKSFCYYLHALQLDFLMEKNRSELQDLHKKVVHQFKKHYKCYISISSEEDC
MYWCNFLAYHMAGANMYDELCGLMFSLDWIKIKTERIGPAHLIHEYVEYSKILDQKDTNA
RENFQEFLSLNGHLLGHLPFLDIIQLGLCQPENSEVYRQAKLRAQQELNEGSLYVEWINK
TSVKNMYRLVVHPHTATVYHACFSQDHQRIATCGADKTLQVFKTESGEKLLEVKAHDDEV
LCCAFSMDDRFLATCSMDKKVKVWNSRIGELVCEFEEHTEQVNFCHFSHHLLATCSNDTY
IKLWDLNSKYCRNTLFGHEGSVTHCRFSPDDKYLASCSADGTLKLWNVQTANELKTINIG
DFFKNGDGYHDEVEVLVKCCSWSSNGTAIVVAAKNKLFLVDVKTKELLAEALLSHHNTIQ
YCDFCPNSQIVAVAFSHCSVEIWNIDSISKIAECLGHMSWVHSVNFSLDGSFFVTSSDDQ
TIRIWETNKVCKSSAIVLNREIDVSFLDNKVNILAIGSLKHLQLINGSGDAVYLTEEQKS
SICCCCLSEDLQFAAYGDENGIVKVLNVSDRSVLKSRIGHRKAVQHCQFTSDGKTLISSS
DDSTIQIWNWQSEKCIILKGHKEPVKNFHLLKQSRLLSWSFDGTVKVWNILTGVLEKDLT
CHEDAVLSCAVSPDATIFSTTSADKTAKIWNFRSSSALHTLSGHKDCVRCCTFSLNNELL
ATGDDHGEIRVWSISTGKLLHLYFSATTNEGGSAYGGWVTGLHFSPDGKVLVSSGGYIKW
WNVDTNQSLQTFYTNGTNLKSLHVSPDFKTCVTLDNLGILYVLRIME
NT seq 3744 nt   +upstreamnt  +downstreamnt
atggatgagagagctagaagttatttgcttcagaaccgccaagctttggaaacagatatc
aagacatcttatataatggatcatatggttgctgatgataccttgacagtggtggaagag
gagaaagtaaaagctcagactacacaaaaagaacgggcatctatgcttctaaaattaatt
attgccaaagacaattatgcatatatatctttttataatgctttacaacaggaaggatac
aaagatcttgctgctctccttcaagatggcctcccttttatttcaccttcaaataaaaca
aattctgagaatggtataacttcatatgttaagactaccctatgtgaaggtggagttcca
cagaggccagtagtatttgttactcgtccagaattactaaaaaaaatacagcagaagcta
tgcaggttaagaaatgatccaggatgggtgattatttatggcatggctggcagtggaaaa
tctgttttggcagcagaaactctacgtaaccacaatcttttaaaagattgctttccagga
ggagtgcattgggtttctgttggaaaacaggataaagcaggtctgttaatgaaactccaa
aatctttgcctgaaattagacaaggacttcacttattcacaaaggccaccatttaatatc
gaggaagcaaaagatcgccttcgtttattgctgttgcgcacgagcccaagatctctcttg
gtacttgatgatatttgggattcctgggttttaaaagcttttgataatcagtgtcagatt
cttatcaccagtagagacaggagtgtagcagattctgtaactggcaataaatatgaagtt
tctgtagaaagtggattagcacatgaaaaagcacttgaaatattatccctgttcgttaat
atgaaagtaacagagctgccggaaaaagctgatcatattgttagagaatgcaaaggttct
cctctcgtggtatcattaataggagcattattacaagtctttcccaatcgctgggaatac
taccttagacaacttcaaaacaaacagtttaaaagaataaggaaatcctcatcttatgat
tatgaagcacttgatgaagcaatgtctataagtgttgatatgttgccagaaaattttaaa
ggttattacagagatctttctgttcttccaaaggatgttaaagtgccttcaaaggtattt
tgtattctttgggatatggagattgaagaagttgaagacatactgcacgaatttgttaac
aaatctctcctattttgcgatcgaaatggaaaatcattctgttattatttgcatgctctc
caacttgattttcttatggagaagaatcgcagtgagcttcaagatctacataaaaaagta
gttcatcagttcaagaaacattataagtgttacatatctatttcatcagaggaggactgc
atgtattggtgtaattttctggcttaccatatggcaggtgccaatatgtatgatgagcta
tgtggtctcatgttctcattagattggattaaaataaaaacagaacgaatagggcctgct
catttgattcatgaatatgttgaatacagtaaaatactggatcagaaggatactaatgca
cgtgaaaacttccaggaatttttgtccttgaatgggcatctccttggacatcttccattt
ctagacattatacagttgggactgtgtcagccagaaaattcagaagtgtatcgacaagca
aaactgcgagctcagcaagaacttaatgaaggatctctttatgtggaatggatcaataaa
acatcagtgaagaacatgtaccgtttggttgtgcatccacatacagctaccgtttaccat
gcttgtttttcccaggaccatcaaagaatagctacatgtggagctgataaaactttgcag
gttttcaaaactgaaagtggagaaaagctcctagaagtaaaagctcatgatgatgaagtg
ctctgctgtgctttttcaatggatgacagatttctagccacttgttcaatggataaaaaa
gtaaaagtctggaactcaagaataggtgaacttgtgtgtgaattcgaagaacatacagag
caggtcaacttctgccattttagtcatcatttattagcaacatgttcaaatgatacttat
atcaaactctgggacctgaatagtaagtattgtcgcaatacattgtttggtcatgaagga
tctgtaacccattgcagattttcaccagatgataaatacttggctagttgttcagctgat
ggaactttaaagctttggaatgtgcagacagcaaatgaactgaaaactatcaatatagga
gacttcttcaaaaatggggatggataccatgatgaagtggaagtgttagtgaagtgttgt
tcctggtcatctaatggtacagcaatagtagtagcagctaaaaataaactttttcttgtg
gatgttaaaaccaaggaattattggcagaggctcttttgagccaccacaacacaatccag
tactgtgacttctgtcccaatagtcaaatagtagcagttgctttttcacattgttctgtt
gaaatatggaacatcgactccatttcaaaaatagctgagtgcctaggacatatgagttgg
gtacattctgtgaatttttctcttgatgggtctttttttgtcacgtcttctgatgaccaa
acaataaggatatgggaaacaaataaagtatgcaagtcctctgctattgtgttaaatcgt
gaaatagatgtttcatttctggataataaagtcaacatcctggcaataggaagtctgaag
catttgcagctaattaacggatctggcgatgctgtttatttgactgaagaacagaagtct
tctatttgctgctgttgtttgagtgaagacctacaatttgctgcatatggagatgaaaat
ggaattgtaaaggttttaaatgtatcagataggagtgttttaaaatccagaattggacac
aggaaagctgtacagcactgccagtttacttctgatggaaaaactcttatttcaagctcc
gatgattcaactatacagatatggaattggcagtcagagaaatgcattattctgaaagga
cataaagaacctgtcaagaattttcatcttctgaagcaatcaagactcctttcatggtca
tttgatggaacagttaaagtctggaatatacttactggagtactagaaaaagatcttact
tgtcatgaagatgctgttctttcttgtgctgtttcacctgatgccactatattttctact
acctctgctgacaaaactgccaagatatggaacttcagaagttcatcagctcttcatact
ttgagtggccacaaagattgtgtgagatgctgtacattctctcttaataatgaattattg
gccacaggagatgaccatggagaaataagggtttggagcatatcaacaggtaaattactt
cacttgtatttttctgccacaacaaatgaaggaggatcagcatatggaggctgggtgaca
ggccttcatttttctcctgatggtaaagtgcttgtttcttctggaggatacatcaagtgg
tggaatgtggatactaatcaatccttacaaactttctacacaaatggaacaaatctcaaa
tcactgcatgtgtcccctgatttcaaaacatgtgtgacactggataatctaggcattctt
tatgtgctacggattatggaataa

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