Pituophis catenifer annectens (San Diego gophersnake): 139321580
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Entry
139321580 CDS
T11059
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
139321580 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcae03000
]
139321580 (KDM2B)
04121 Ubiquitin system [BR:
pcae04121
]
139321580 (KDM2B)
03036 Chromosome and associated proteins [BR:
pcae03036
]
139321580 (KDM2B)
Enzymes [BR:
pcae01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
139321580 (KDM2B)
Transcription factors [BR:
pcae03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
139321580 (KDM2B)
Ubiquitin system [BR:
pcae04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
139321580 (KDM2B)
Chromosome and associated proteins [BR:
pcae03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
139321580 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
139321580 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
F-box
JmjC
Cupin_8
LRR_At1g61320_AtMIF1
AppA_SCHIC
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
139321580
NCBI-ProteinID:
XP_070806434
LinkDB
All DBs
Position
Unknown
AA seq
1261 aa
AA seq
DB search
MEAERGSPRRLRCIGRRLYDENEDLSDVEEIVSVRGFNLDEKLRSRSYRGDFVRPMDGQD
FTFEYVQQEALKVPLIFRSKTGLGIKMPDPNFTAQDAKMLVGSRRIVDVVDVNTQKGVEM
SMAQFVRYYETPEAEREKLYNMISLEFSHTKLANIVKRPNVVDLVDWVDNMWPRHLKERQ
TESTNAISEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLQNL
ELYEEWVVSGKQSDIFLGDRVELCQRIELKQGHTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQAKFRYPFYYEMCWYVLERYVFCLTQRSHFNREYLQESMLI
DTSRKRSLDSFSSDSWGDMDEDSCDVRAQEDKDNNPEKVPKISSDLPSSPNSTHSEGKET
LGKKPKSRFFKRTLSNESEESIKSATVDYPIGSPATEVPAKWTHLTEFELKGLKALVEKL
ESLPENKKCVPEGIEDPQALLEDMKNILKEHAEDDQNLAITGIPVVSWPKKNAKNRTVGR
PKGKLGPSSAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQ
SCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICNEIIHPGCLKVRE
SDGVVNEELPNCWECPKCNHAGKTGKAYKQKRGPGFKYASNLPGSLLKEQKINRENKEVV
PEIPKRKVECEESPRKKSDERPPKPPLDPLLRRKSSEEAHLRRKRKFEKPQEPAMRKRLK
LGKEEKLFRKKRRSWKTPDDRVAALKPLRRFKQEGGEVFPEEPPKTKESDQSRSSSPTAG
PSSEGAESREKKKFKIRRKARLPNKELSKELSKELNQEIQKTENSLANEDHQPIKSEPES
ENEEAKHHLGPEQPHPLSKGFNGTPRELRHQLLSSLRSSSTPPTPRTIARPPPSLSPPKC
MQMERHVVRPPPISPPPDSLLLDDGAAHVMQREVWMAVFRCLRPRELCLCMRVCRTWNRW
CCDKRLWTKIDLKHCKSITPLMLSGIIRRQPVTLDLSCTNISKKQLSWIITRLPGLRDLL
LAGCSWIAVSALCSSSCPLLRTLDSQWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNI
TDLRLSGLDITDDSLRLIIRHMPLLSKLNLSYCNHVTDKSINLLTAVGTTTRDSLTEVIL
KDCNKVTDQCLSYFKRCGSICHIDLRYCKQVSREGCEQFIAEMSVSVQFSQTEEKLLKKL
S
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagaaagaggctcgcccaggagactgcgctgcatcggccggcggctctacgac
gagaacgaggacctgtccgacgtggaggagatcgtcagcgtgcgcggcttcaacctggac
gagaagctgaggagccgcagctaccgcggggacttcgtgcggcccatggacggccaagat
ttcacttttgaatacgtgcagcaggaagcgctaaaagtgcctctcatcttccgaagtaag
actggactgggaattaagatgcccgaccccaacttcactgcccaagatgctaagatgctc
gtggggagccgccgaattgtggacgtggtggatgtgaacacccaaaaaggtgttgaaatg
agcatggctcaatttgtgcgttattatgaaacccccgaggcggagcgtgagaagctgtac
aacatgatcagcctggaattcagtcacaccaaactagccaacattgtcaagcgtcccaat
gtcgtagatttggttgactgggtggacaacatgtggccgcggcatttaaaggaaagacag
accgagtccacaaatgccatttcggagatgaaatatcccaaagtgaaaaagtactgtttg
atgagcgtgaaaggatgcttcaccgatttccacattgatttcggaggtacttcggtgtgg
tatcacgttttccggggaggaaagatcttttggctgattcctccaacgttgcagaaccta
gaactttacgaggaatgggttgtctctgggaagcagagtgatatttttctgggggaccgc
gtggagctgtgccaaagaatcgaactgaaacaagggcacactttcttcattccttcaggg
tggatccatgccgtttacaccccagtggattccttggtgtttggtggaaatatcttgcat
agctttaatgttcccatgcagcttcgcatttatgaaattgaggacagaacaagggtccaa
gccaagttccgctacccgttttactatgagatgtgttggtatgttttggagagatacgtg
ttctgtctaacccagcgctctcatttcaacagggagtatctacaagaatcaatgttaatt
gatacctcgaggaaacgtagcttggatagcttctcgtccgattcctggggagacatggat
gaggactcgtgcgatgttcgtgctcaggaagacaaggataacaatcccgaaaaagtcccc
aagatctcgtccgacctcccctcttctcctaacagcacacactcggaggggaaagaaacg
ttggggaagaagccaaaatctcgcttcttcaaaaggactctctccaacgagtcggaggaa
agtataaaatcagctacggtggactatcccatcgggtctcctgccaccgaggtccccgcc
aaatggactcacttgaccgaattcgagctgaaaggcttgaaggccctggtggaaaaactg
gaatctcttccggagaacaagaaatgcgttcccgaaggcattgaagaccctcaagctctc
ctggaagatatgaagaacatcctgaaggaacacgcagaggatgaccagaatctggccata
actgggattcccgtggtatcctggcctaagaaaaacgcaaagaaccggacagttgggcgt
ccaaaggggaaactgggcccttcctcagctgtgaagcttgcagcgaaccggacgactgca
ggtgcgcgtcggagaaggacgcgatgtcgcaagtgcgaggcctgcttgcggacagagtgc
ggcgaatgtcatttctgcaaggacatgaagaagtttggggggcctggccgcatgaaacag
tcctgcattatgaggcagtgcatcgcgccggtgctgccccacactgccgtgtgcttggtg
tgtggagaagcagggaaggaagacacggtggaggaagaagagagcaaatttaatctgatg
cttatggagtgctccatctgcaacgaaatcatccaccccgggtgccttaaggtgcgggaa
tcagacggcgtggtgaacgaggagcttccgaattgttgggaatgtcccaagtgtaaccat
gctggaaaaacggggaaagcgtacaagcaaaagcggggccccgggttcaaatacgcttcc
aacctgccgggctctttgctgaaagagcagaagatcaaccgagagaacaaggaagtcgtc
cccgagatccccaagcggaaagtcgagtgcgaggaatcgccccgcaagaaatccgacgag
cgtcctccgaagccccccctggatcctctcttgaggaggaagtcctcggaggaagcccac
ctgcgccgcaagcggaaattcgagaaaccccaagagccggccatgaggaaacggctaaaa
ctggggaaagaagaaaagctgttcaggaaaaagaggcgctcctggaagaccccagatgac
cgggtggctgccctcaaacccttgcggcgcttcaagcaagaaggtggggaggtctttccc
gaggaacctccgaaaaccaaggagagcgaccagtcgcgttcgagctcgcccaccgcgggg
ccaagttcagaaggcgccgaatcccgggagaagaaaaaattcaagatccgccggaaagcc
cgcctgcccaacaaagaactgagcaaggaactgagcaaggagctcaaccaggagatccag
aagaccgagaacagcctggccaacgaggaccaccaacccatcaaatcggagccggagagc
gagaacgaggaggccaagcaccacctcggcccggagcagccgcacccgctcagcaagggc
ttcaacgggacgccgcgggaactccgccaccagctcctctccagcctccgcagcagcagc
accccccccacccccaggaccatcgcccggccccctccttccctctcgccccccaagtgc
atgcagatggagcggcacgtggtacggccgccccccatcagtcccccgcctgactcgctc
ctgctggacgatggagcggcccacgtaatgcagagggaggtgtggatggccgtcttccgc
tgcctacgacccagggaactctgcctctgcatgagggtgtgccggacctggaatcggtgg
tgctgcgataaaaggctgtggaccaaaatagacctcaaacattgcaaatccatcactccc
ctgatgctgagcggcatcatcagaagacagccggtcacgctagatctgagctgtacaaat
atctcgaaaaagcagctgagctggattatcacgcggcttccaggtctccgggatctgctt
ttggctggatgctcgtggattgccgtgtccgcactctgcagctccagttgtcccctcctt
cgaacactggacagccagtgggtggaaggcctgaaggatgcccagatgcgagaccttctg
tcgccgccaactgacaaccgtccaggccagatcgacaaccgaagcaagctacggaacatc
accgatctccgcctgtccggcctggacatcacagacgattctctgcgtctgattatccgg
cacatgcctctcctgtccaagcttaatcttagctactgtaaccacgtgacggacaagtcc
atcaacttgttaacggcggtggggaccaccacgcgggactccctaaccgaggttattttg
aaagactgcaacaaggtgacggatcagtgcctgtcgtacttcaagcgctgcgggagcatc
tgtcacatcgacctccgttactgcaagcaggtcagcagggaaggctgcgagcaattcatc
gccgagatgtcggtcagcgtccagtttagccaaacggaagagaaattgctgaagaagctg
agttag
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integrated database retrieval system
