Pituophis catenifer annectens (San Diego gophersnake): 139326167
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Entry
139326167 CDS
T11059
Symbol
AGRN
Name
(RefSeq) agrin
KO
K06254
agrin
Organism
pcae Pituophis catenifer annectens (San Diego gophersnake)
Pathway
pcae04512
ECM-receptor interaction
pcae04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pcae00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139326167 (AGRN)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139326167 (AGRN)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pcae00535
]
139326167 (AGRN)
Proteoglycans [BR:
pcae00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
139326167 (AGRN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_1
Laminin_G_2
Kazal_2
Kazal_1
NtA
EGF_laminin
EGF
SEA
Kazal_CFAI
Laminin_G_3
hEGF
EGF_2
Motif
Other DBs
NCBI-GeneID:
139326167
NCBI-ProteinID:
XP_070812404
LinkDB
All DBs
Position
Unknown
AA seq
2064 aa
AA seq
DB search
MRRAKASSGSPSANAAAAASLLPPPLLFLLLLLASGPARGNRSCPEKELERREEEANVVL
TGTVEEIFNVDPVHQTYSCKVRVWRYLKGKEVVTHEILLDGGNKVMIGGFGDPLICDNQV
STGDTRIFFVNPAPHYMWPTHKNELMLNSSLMRITLRNLEEVEHCVEDKPVNYFPQAVPQ
DVCRGMLCGFGAACEKNPTDPSQGVCVCKKATCPSVVAPVCGSDYSTYSNECELEKAQCN
QQRRIKVMSKGACGSKDPCAEVVCSFGSTCVRSTDGQSAKCICMSFCSGLPENTVCGSDG
KDYRSECHLNRHACDKQENIFKKFDGPCDPCKNTHNDMNRVCRVSPRSRRAELLPRPESC
PLKKDPVCGDDGVTYENECVLQRTGAIRGIEIQKLRSGQCQVQDRCRDECRFNAVCLIRR
GLARCSCERVVCDGAYQPLCGRDSRTYFNDCERQKAECQQKAAIPVKHHGPCDLGKPSPC
LSVECQYGATCVVKNQEAVCECQQVCQSVYDPVCGSDNLTYSNPCELDAMACALRKEIRV
KHKGPCDRCRKCQFGAICEAETGRCVCPTECVASSQLVCGTDGNTYGSECELHVQSCIQQ
VSIEVAAQGSCKACGATVCSFGAKCVDGQCLCPRCEQQPSSRVCGSNGITYNNECELRLA
ACQQKEELEVAKRGPCEDECGSGDGSGSGDAIECERDSCRKYGGSWDEDMEDDRCVCDYT
CGTVPQNLVCGSDGVVYANECELKKSRCEKRQDIYVASHGPCQGVPTLPSSSPELLHCSK
TVYGCCPDNVTLALGVGSAGCPSTCHCNPYGSYGGSCDPSTGQCSCKPGVGGLKCDRCEP
GFWNFRGIVTDRKSGCTPCHCDPVGSVRDDCEQMTGLCSCKTGITGTKCKQCPSGSKLGM
SGCEKDLSAPSSCAEMTCEFGASCVEVNGLPQCECPSLLCTEADTSKVCGSDGVTYGDQC
QLRTIACRQGKIIEVKHLGQCTESHAGHPTPPATQQPLDSVPPLAPQITTLAPELTRTSS
SPWHSEDYVSRQSQPVTRRITKPAILSTLPWTTQGIRQTTARPLLTAPVVPAATQTAYVE
SGSAEGSGDPELGTSGDQEGSGTSSAGEEEIEDPKEPSTHLIERATCYNTPLGCCSDGKT
PAADAEGSNCPATKVFQGVLILEEVEGQELFYTPEMADPKSELFGETARSIESVLDELFR
NSEVKRDFRSVQVRHLGQSSAVRVIVESHFDPATSYMAADIQRALLKQIKASKKKTILVK
RPQQENIKFMDFDWIPQLFTTTTTTTIATTMAPTAASSQRFPNITTPRNFNPGRMNGKSS
GGATTKKPSTTLPTSTDRKKPMRPIPTTKKPLRPCDSHPCLHGGTCEDDGRDFTCSCPAG
KGGAVCEKSVRYFIPSFGGKSYLAFKMMKAYHTVRIAMEFRASELSGLLLYNGQNRGKDF
LSLALVNGFVELRFNTGSGTGVITSKVPIEPGQWHALVVNRNRRNGVLSVDGEPHVHGES
PSGTDGLNLDTDLFVGGAPEDQIAVMAERTSVTAGLKGCIRLLDVNNQMYDLREKGDDVL
YGSGVGECGNNPCQPNPCHHGGLCHTMEAEMFHCECLNGYTGPTCADERNPCDPNPCHLS
ATCLVLPEGGSKCECPMGRGGEFCESVAEMDQTVPFLPEFNGFSYLELNGLQTFVPDLQD
KMTMEVAFLSRNPNGLIFYNGQKTDGKGDFISLALHNGYLEYRYDLGKGAAVIKSREPIP
LNSWVSVSLERNARKGIMRINNGERTLGESPLPHTSLNLKEPLYVGGAPDFSQLARAAAV
SASFDGAIQKISIKGTPVLKEENIRSAVEISPFRSHPCTQKPSPCQNRGTCKPRLETYEC
TCPRGFFGTHCEKVLTEKAAGDSEAIAFDGRTYMEYHNAVTKSEKALQSNYFELSIKTEA
TQGLILWSGKGLDRSDYIALAIVDGRVQMTYDLGSKPVILRSTVPINTNQWIQIKASRVH
RDGSLQVGNESPVMGSSPLGATQLDTDGALWLGGLEKLSLAHKLPKSFLTGFVGCIRDVV
VDRQELHLVEDALNNPTILHCAAK
NT seq
6195 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgggcgaaggcttcctccggatcgccctccgccaacgccgccgccgccgccagc
ctgcttcctcctccgctgctgtttttgctgctcttgctggcatcggggccggcccgcggc
aaccggagctgtccggagaaagagctggaacggcgggaggaggaagccaacgtcgtgctc
accggcaccgtggaggaaatcttcaacgtcgatccggtgcaccagacctactcgtgcaag
gtgagggtttggagatacctgaaggggaaggaggtggtgactcacgagatcctcttggac
ggtgggaacaaggtgatgattgggggttttggggaccccttgatctgcgacaaccaggtc
tccacgggagacacccggattttcttcgtcaatcccgccccgcactacatgtggcccact
cacaagaacgagctgatgctcaactccagcctgatgaggattactttgcgcaacctggaa
gaggtggagcactgcgtcgaagataaaccggtgaattacttcccgcaggcagtgccccaa
gatgtttgtcgagggatgctgtgtggcttcggggccgcctgcgagaagaaccccacggac
ccttcccaaggtgtttgcgtttgtaaaaaggccacctgcccttcggtggtggccccggtg
tgcggatcggattactcgacctacagtaacgagtgtgagctggagaaagctcagtgcaac
cagcagcgtcgcattaaagtcatgagtaagggagcttgtggttcgaaagacccctgcgca
gaggtagtctgcagcttcggcagcacgtgcgtccggtccacagatgggcagtcggccaaa
tgcatctgcatgtccttttgcagcggcctcccggaaaacaccgtctgcggcagcgacggc
aaggactaccgcagcgagtgccacctgaaccgacacgcctgcgacaagcaggaaaacatc
ttcaagaagttcgatgggccgtgcgatccttgcaaaaacacccacaacgacatgaataga
gtttgccgggtcagccctcgctcgcgacgggccgagttgctgcccaggcctgaaagctgc
cccttgaaaaaagacccggtatgtggggatgatggagtgacatacgagaacgagtgcgtc
ttgcagaggacgggcgctatccggggcatcgagatccagaagttgcgttcaggacagtgc
caggttcaagacagatgccgggacgagtgccgtttcaacgccgtgtgcttgatccgccgg
ggcctcgcccgctgctcctgcgaacgggtggtctgtgatggcgcctaccagcctctctgc
ggcagagacagccggacctacttcaacgactgcgagcgccagaaggcggagtgccagcag
aaagccgccattccggtcaagcaccatggaccttgtgatcttggcaagccgagcccctgt
ttgagcgttgagtgccagtacggtgccacctgcgtggtgaagaaccaggaggccgtgtgc
gagtgtcagcaagtgtgccagagcgtctacgatccggtctgcggcagcgacaacctcacc
tacagtaacccttgcgagctggacgccatggcgtgcgccctccggaaggagatccgggtg
aaacacaagggcccttgtgaccgctgtcggaagtgccagtttggtgccatctgcgaggcc
gagacgggcaggtgcgtgtgccccaccgaatgcgtcgcctcctctcaactggtttgcgga
accgacgggaacacctacgggagcgagtgcgaactccacgttcagtcctgcatccaacag
gtctccatcgaggtggcagcccaaggcagctgcaaagcctgtggggccacggtgtgttcc
ttcggggcaaagtgcgtggacgggcagtgcctctgtccccgttgtgagcaacagccctcg
tcccgcgtctgcggaagcaacggcatcacgtacaacaacgagtgcgagctgcgcctggcg
gcttgccagcagaaggaagagctggaggttgcgaagaggggcccgtgcgaagacgagtgc
ggctcgggcgatgggtctggctccggagatgccatcgagtgcgagagagacagctgccgg
aagtacgggggttcgtgggacgaggatatggaagatgaccgttgcgtgtgtgattatacc
tgtgggaccgtaccacagaacttggtgtgtgggtcggacggggtagtctacgcgaatgag
tgtgaacttaaaaaatcccgctgcgagaaacgccaggacatttacgtggcaagccacgga
ccctgccaaggggtcccaacgcttccgtcttcttcgccagaactccttcactgtagtaaa
actgtttacggctgctgcccagacaatgtgacgttggcgctcggagttgggtcagctgga
tgccccagcacttgccactgtaacccctacggctcctacggagggagctgcgatcccagc
acgggccagtgctcctgcaaacccggcgtcggggggctgaagtgcgaccgctgcgaaccc
ggtttctggaacttccgcggcatcgtgacggacaggaagagcggctgtaccccctgccac
tgcgatcctgtgggatccgtccgggatgactgcgaacagatgaccggcttgtgttcgtgt
aaaaccgggattaccggcaccaaatgcaaacagtgtcccagcggaagcaagctggggatg
tccggttgtgagaaagatctctcggccccctcatcctgcgccgaaatgacctgtgaattc
ggggcgtcgtgtgtggaagtcaatggccttccccagtgtgagtgtccgtcgttgctttgc
acggaagctgacacctccaaggtctgtggctctgacggagtgacctatggcgaccagtgc
cagttaaggaccattgcttgccggcagggaaagatcatagaggtgaagcatttgggccag
tgcacagaatctcatgccggccaccccaccccgcctgcaacccaacagcctttggactct
gttccccctctggcaccccaaatcacgactctggctcccgagctaaccaggacatcctcc
tctccttggcattcagaagactacgtttcccgccagagccagccggtcacccgaaggata
acgaagcctgctatcctctccactcttccctggacgactcagggcatccgccagaccact
gccagacccctcctgacagcccccgtggtccctgccgccactcagacggcttacgttgaa
tcgggcagcgcggaaggcagcggagatccagaactgggcaccagcggtgatcaggaaggc
agcgggaccagctcggcaggtgaggaagaaattgaagacccaaaggagccaagtacccac
ctgatcgagagagccacctgttacaacacccctctgggatgctgctcggacggcaagact
ccagccgctgacgccgaaggaagtaattgcccagccaccaaagtcttccaaggggtcctg
attttggaagaggtagaaggccaggagctcttttacaccccggaaatggccgatcccaaa
tcggagctttttggggagacggcccgaagcatcgaaagtgtgctggatgagcttttccgc
aactcggaggtgaagagggatttcaggagtgtccaggtgcgacatctgggccaaagcagc
gccgtcagggtcattgtggagtctcattttgacccagcaacttcttacatggctgctgac
atccagagggcacttttgaagcagatcaaagcctctaagaagaaaacaatcttggtgaag
agaccccagcaagagaacatcaagttcatggactttgactggatcccccagctcttcacc
acaaccaccacgaccacgatcgccaccacgatggctcctacggccgccagctcccagagg
ttccccaacatcacgacaccccggaacttcaatccaggacggatgaatgggaaatcctct
ggaggagccaccaccaaaaagcccagcaccacccttccaacctctactgaccggaagaaa
cccatgcgccctatacccaccaccaagaagcccctgcggccctgtgactctcacccatgc
ttgcatggtggcacctgcgaggacgatggccgagacttcacttgcagctgccctgcagga
aaaggaggagcggtttgtgagaaatccgtccgatacttcatccccagctttggcgggaag
tcctacctggcgttcaaaatgatgaaggcctaccacaccgtacgtatcgccatggaattc
cgggcctccgagctgagcgggctgctcctgtacaatggacagaaccgtgggaaggacttc
ctctccctggcactggtgaacggattcgtggagctcaggttcaacaccggctcggggaca
ggcgtgatcaccagcaaggtgcccattgagcctggccagtggcatgcgcttgtggtcaat
cggaaccggaggaacggcgtgctgtccgtggacggggagccccacgtgcatggcgagagc
ccaagtggaaccgacgggctgaatctcgacaccgatctctttgtcggaggggccccggaa
gaccaaattgctgtgatggccgagcgcacgtcggtcactgctggtctgaagggctgcatt
cgtctgctggacgtcaacaaccagatgtacgacctgcgagagaaaggcgacgatgtgctg
tatggcagcggagtgggggagtgtggcaacaacccttgccagcccaatccgtgccaccac
ggcgggctctgccataccatggaagctgagatgtttcactgcgagtgtctgaatggttat
acaggacccacctgtgccgatgagaggaacccctgcgaccccaacccctgccacctctcc
gccacctgcttggtgttgccggaaggcggatcgaaatgcgaatgccccatgggacgagga
ggcgaattctgcgaatcagttgcagaaatggatcagaccgtgcctttcctgccggaattc
aacggattctcatacctggagctgaacggtctccaaacatttgtgccagatctacaggat
aaaatgaccatggaagtggcgttcctgagcagaaaccccaatggtttaattttctacaat
ggacagaagacggatggcaaaggcgattttatctccttggcccttcacaatggatacctg
gagtacagatacgatctgggcaaaggagccgccgtcatcaagagcagagagcccatccct
ctgaatagctgggtcagtgtttcgctggagaggaacgcacggaagggcatcatgagaatc
aacaacggagaacggaccttgggtgaatcgccgttgccccacacctcacttaatttaaag
gaacccctctacgtcgggggcgcaccggacttcagccaactggctcgggctgccgcggta
tctgctagctttgacggagccattcagaagatttccatcaaagggacccccgtcctgaag
gaggagaacatccgcagcgctgttgagatttcgcctttccgctcccatccctgcactcaa
aagcccagtccatgccaaaacagaggaacctgcaaaccccgtctggaaacgtacgaatgc
acctgccccagaggcttcttcgggacccactgcgagaaagtcctcaccgagaaggcagcc
ggagactcggaagccatcgcctttgacggcaggacctacatggaataccacaacgccgtt
accaagagcgagaaggctctgcagtccaactactttgagctgagcatcaaaaccgaagcc
acccaaggtcttatcttgtggagcgggaagggcctggatcgatcggactacatcgctttg
gccatcgtggacggccgggtccaaatgacctatgacctcggctcaaaacccgtgatcctg
cggtctaccgtcccaatcaacacgaaccagtggattcagatcaaagcgtccagagtccat
cgagatgggtccctacaagtcggcaatgagtctcccgttatgggttcctcgcctcttgga
gcaacccagctggatacagacggggccctttggctgggtgggttggagaagctcagcctg
gcccacaagcttcccaaatctttcctcaccggctttgtgggctgcatacgagatgtggtg
gtggatcgccaagaactccacctggtagaggacgctttaaacaaccccaccatattacac
tgcgcggccaaatga
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