Pasteurella canis: K7G93_001412
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Entry
K7G93_001412 CDS
T07908
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pcai
Pasteurella canis
Pathway
pcai03030
DNA replication
pcai03410
Base excision repair
pcai03420
Nucleotide excision repair
pcai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K7G93_001412 (ligA)
03410 Base excision repair
K7G93_001412 (ligA)
03420 Nucleotide excision repair
K7G93_001412 (ligA)
03430 Mismatch repair
K7G93_001412 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcai03032
]
K7G93_001412 (ligA)
03400 DNA repair and recombination proteins [BR:
pcai03400
]
K7G93_001412 (ligA)
Enzymes [BR:
pcai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K7G93_001412 (ligA)
DNA replication proteins [BR:
pcai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K7G93_001412 (ligA)
DNA repair and recombination proteins [BR:
pcai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K7G93_001412 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K7G93_001412 (ligA)
MMR (mismatch excision repair)
DNA ligase
K7G93_001412 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K7G93_001412 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_ligase
HTH_16
Motif
Other DBs
NCBI-ProteinID:
UEC22688
LinkDB
All DBs
Position
complement(1510189..1512210)
Genome browser
AA seq
673 aa
AA seq
DB search
MTKSIKLELEQLRNTLRYHEYQYHVLDSPQIPDAEYDRLFHQLKNLEKQYPELITTDSPT
QRVGAKPLSGFTEVKHEIPMLSLDNAFSDEELKAFVKRIDDRLIVSPEQLTFCCEPKLDG
LAVSILYVEGKLVQAATRGDGTTGEDITSNIRTIRNIPLQLLTEKPPKRLEIRGEIFMPQ
TGFELLNEKALARGEKTFANPRNAAAGSLRQLDPKITSQRPLVLNAYGIGIAEGIELPTT
HFERLQWLKTIGIPVNTEVQLCHGITQVLDFYRQIMQKRSNLGYDIDGTVIKVNDIELQE
ELGFISKAPRWAIAYKFPAQEELTILNSVEFQVGRTGAITPVAKLSPVFVAGVTVSNATL
HNGDEIDRLDIAIGDTVIIRRAGDVIPQIIGVVHEKRPADAKKIEFPSNCPVCDSIIVRI
EGEAVARCTGGLFCAAQRKEALKHFVSRKAMDIDGVGAKLIEQLVDREQIHTPADLFKLD
LTTLMRLERMGPKSAQNALDSLEKAKKTTLARFIFALGIREVGEATALNLANYFKSLTAL
KEASLEQLQQVQDVGEVVANRIFVFWREPHNVAVVDDLLAQGIYWDTVELKEADDNPFKE
KTVVLTGTLTQMGRTEAKALLQSLGAKVSGSVSAKTDLVIAGESAGSKLTKANELNVQVI
DEQTFLDWSQPYR
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaagtatcaaactcgaattagaacaattacggaataccttacgctatcatgaa
tatcaatatcatgtgctggatagccctcaaattcctgatgcagaatacgatcgtttgttt
catcaattaaaaaatcttgaaaaacaatatccagagttgataaccacagactcaccaaca
caacgtgttggggcaaaacctttatctgggtttactgaagtaaagcatgaaatccctatg
ttatcgttagataatgctttttcagatgaagagcttaaggcatttgttaagcgtattgat
gatcgtcttatcgtatcaccagagcaattaactttttgttgtgagcccaaacttgatgga
ttggctgtaagtattttgtatgtcgagggtaaattagtacaagcggcgacgcgtggagat
gggactaccggcgaggacattacttctaatattcgtactatacgtaatattcccctgcaa
ttattaacagaaaagccaccgaaacgtttggaaatacgtggtgaaatatttatgccgcag
acagggtttgaattgttaaatgagaaagccttagcaagaggagaaaaaacctttgctaat
ccgcgtaatgcagcagcaggatcattacgtcaattagatcctaaaattaccagtcaacgt
ccattagtacttaatgcttatgggattggtattgcagaagggatcgaattaccgacaact
catttcgagcgtttacaatggcttaaaacaatcgggattccagtgaatacggaagttcag
ttgtgtcatggtataacacaggtattggatttttatcgtcaaattatgcaaaaacgcagt
aacttaggctatgacattgatggaacagtgattaaagtcaatgatattgagttacaagaa
gaacttggttttatttcgaaagcacctcgttgggcgattgcctataagtttcctgcacaa
gaagaacttacaatattaaatagtgttgagtttcaggtgggaagaacaggtgcgattaca
cctgtcgcaaaattatctccagtatttgtagcgggtgtgacagtgagtaatgcgacttta
cataatggtgatgaaattgatcgcttagatattgctattggcgatacggtaatcattcgt
cgtgccggtgatgtgatccctcaaattataggtgttgtgcatgagaaacgtcctgctgat
gctaaaaaaattgagtttccatcaaattgcccagtatgtgattccattatcgtacgtatt
gaaggtgaggctgttgcgcgttgtacaggtggtttattttgtgcagcacaacgtaaggag
gcactaaaacattttgtttcgcgtaaagcaatggatattgatggtgtgggtgctaaactc
atcgagcaattagtcgatcgtgaacaaattcatacaccagcagatttatttaagttagat
cttactacattaatgcgtctagagcgcatgggaccaaaatctgcacaaaatgcattagat
agtttggaaaaagcgaaaaaaacgacattagcccgttttatttttgcattgggcattcgt
gaggtgggcgaagcgactgcactaaacttagcgaattatttcaaatcattaaccgcgtta
aaagaagcaagtcttgaacaattacagcaagttcaagatgttggggaggtggttgccaat
cgtatttttgtattctggcgtgagccacataatgtcgcagttgtcgatgacctactggcg
caggggatttattgggatactgtcgagctgaaagaagcagacgataatccatttaaagaa
aaaacagtcgttttaacaggcactttaactcaaatggggcggacagaggctaaagcatta
ttgcaaagtttaggtgcaaaggtgagtggtagtgtgtccgcgaaaacagatttagtgata
gcaggtgaaagtgcaggatctaaactgacaaaagcaaatgagttgaatgtacaagtcatt
gatgagcaaactttcttagattggtcacaaccttatcgttaa
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