Pomacea canaliculata (golden apple snail): 112573279
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Entry
112573279 CDS
T05881
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcan
Pomacea canaliculata (golden apple snail)
Pathway
pcan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112573279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcan03400
]
112573279
Enzymes [BR:
pcan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112573279
DNA repair and recombination proteins [BR:
pcan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112573279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
DNA_ligase_IV
RNA_ligase
BRCT_2
mRNA_cap_enzyme
MCP-like_PDC_1
DUF664
Motif
Other DBs
NCBI-GeneID:
112573279
NCBI-ProteinID:
XP_025109280
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All DBs
Position
LG10:23812477..23827992
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AA seq
927 aa
AA seq
DB search
MADAAVSSDVNPTSSTVASLVPFAELCGLLEKISKTQGNDKKKRVLKDFVDRWRNLHDDL
HKKDSDTTMDSFYPAMRLLLPHLERERMAYGVKENGLARLMIKVLCLAKDSQDAQRLLNY
RAVKTVQGDAGDFASMAYFVLKTRCPSRGSLTIQQVNEALDSIATNNAARKKEAVEESIL
FLLKNLSAVEQKWLVRMIVKELKMGLSQASVFSVYHTDAEDFFNVNNSLEKVCRLLRNPA
TRMHEIGISIFSPFTPMLGDRGTPDKVEKLMEGRPYLIETKFDGERVLLHKDGEEYKYFS
RSGNEYTSVFGATPFDGTLTPYIANCFKPEVKTCILDGEMLGYHSATKTFGSKGEQFDIK
SRDVVEAKGYQPCVMVFDILLYNDHVLTNLPLRQRLEYLEKVIVPVDGRILLSQHKEART
NQDCVDALNDAIDNREEGIMVKDAESTYRPNTRKGGWWKLKPEYVGGLMDELDLLIIGGF
FGEGHRGGMMSHFLCGVAVPEANGEEPKVFYSFCKVGSGYSKNQLREFNQRLAEHWQVFD
KRKPPACIELASGFKEKPDAWIQPDKSCIVQVKAAEIIVSERFKVGYTLRFPRVEMIRDD
KPWHQCMTTADIEDLRQKSGGKLAGSRMELAGVEEGAGRGRRKRHIAPRVQHPKLMARFQ
GADVSNVTQVSHLLSGREICVINGPSDMTKDELERKVAEMGGIFVQNPGKTTFCILAEKT
NVKVTNLIKTDKYDIVKVSWFQKLLDRGQWVDWTPSDMIHASAGTRKRFLQEFDQYGDSF
TEDISEEQLKDIFHAMDHSGTDIPTMKPEDIAQLEEEYFSEDSPYGLFRTCRIYMDSYMI
VGNDSTHIATSSLDLLAIELRFFGATISSRLDSDVSHVLVDKRDLSRLEQLKIVRRGCKR
KFHIVTEEWVRACLEEGTLCAEKPYEL
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgcagccgtgtcatctgatgtgaaccctacatcaagcacagtagcaagtcta
gttcccttcgccgaactctgtggtcttctcgaaaaaatatccaaaacccaaggcaacgat
aagaaaaagcgcgtgctgaaggattttgttgatcgctggagaaatcttcacgatgacttg
cataaaaaagattctgataccaccatggactccttttatcctgccatgcgactgctgcta
ccacatttagaacgagagcgaatggcatatggggtcaaagagaatggcttagcacggctt
atgataaaagtactgtgtcttgctaaagacagccaagatgcccaaagacttcttaactac
cgagcagtaaagacagtgcaaggggatgctggggattttgccagcatggcttattttgtg
ctcaaaacaagatgcccatctcgtgggtccctgaccattcaacaggtgaatgaggcactt
gattccattgctaccaataatgctgcaaggaagaaagaagcagtggaagaaagcattctg
tttcttttgaaaaatttgtcagctgtggagcagaaatggctagttcgcatgattgtcaag
gaactgaagatgggattgagccaggcatctgtattttcagtgtatcacactgatgcagaa
gatttcttcaatgtcaataacagtttggagaaggtatgtcgactgcttcgcaatccagca
acaagaatgcatgagatcgggatttctattttctctcctttcacgcccatgcttggggat
cgaggtacacctgataaagttgagaagctgatggagggtcggccatatttgattgaaaca
aagtttgatggtgagcgtgttctgcttcataaagatggagaagaatataaatacttctcg
cgcagtggcaatgaatacacaagtgtatttggggctacaccttttgatggcacgctgaca
ccgtacattgccaactgcttcaagccagaggtaaaaacctgcattttggatggtgagatg
ctgggttatcattctgctaccaagacatttggatccaaaggagagcagtttgatataaaa
tctcgtgatgtagttgaggccaagggttatcagccttgtgttatggtatttgacatcttg
ttgtacaatgaccatgtgcttaccaacttgcctctgcgtcagcgactggagtatcttgag
aaagtgattgttcctgtagatggcaggattcttcttagccagcataaagaagcccgcaca
aatcaagactgtgtagatgctttgaatgatgccattgacaatcgggaagaaggtatcatg
gttaaagatgcagaatcgacatacagacccaacacacgaaaaggcggctggtggaaacta
aagccagagtatgttggggggctcatggatgagcttgacttgttgatcattggaggcttt
tttggggaaggccaccgtgggggtatgatgtcgcactttctttgtggagttgctgttcct
gaagcaaatggagaagagccaaaagtattctattccttctgcaaggttgggtctggatat
tccaaaaatcagctgagagaatttaaccaacggctggctgaacactggcaagtgtttgat
aaacgaaagccacctgcatgcatagagctggcatctgggtttaaagaaaaaccagatgct
tggatacaaccagacaaatcatgcatagtgcaagtgaaggcagcagaaataatagtcagt
gaacgattcaaagttggatacacgcttcgttttccaagagtggagatgattcgagatgac
aaaccatggcatcagtgcatgactactgcagacattgaggatcttagacaaaaatcaggg
ggcaagctggcaggatcccgcatggagctagcaggtgttgaagaaggagcaggccgtggc
agacgtaaacgccacattgctccaagagtgcaacatcccaagctgatggctcgttttcaa
ggagctgatgtgtctaatgtgacacaggtatcacatcttttgtcaggtcgagaaatttgt
gtgataaatggaccatcagatatgacgaaagatgaactggaacgaaaggtggctgaaatg
ggtggaatctttgtgcagaatccagggaagacaacattctgcatcctggcagagaagaca
aatgttaaagtaacaaatctaatcaagacagacaagtatgatattgtcaaagtcagctgg
tttcagaagctcctagacagagggcagtgggtggactggacaccaagtgacatgatccat
gcatcggcaggtactcgcaaacgattcctccaggagtttgaccaatatggtgatagtttc
actgaagatatatctgaagagcagctgaaagatatttttcatgcaatggaccatagtggc
acagatattcccacaatgaaaccagaagatatcgcacaacttgaagaagaatatttttca
gaagattctccatatggacttttcagaacgtgcagaatctacatggattcctatatgatt
gttgggaatgattccacacacattgcaacttctagcctggatctgcttgccatagagtta
cgtttctttggtgccaccatttccagcaggctggacagtgatgtgtcacatgtccttgtt
gacaaaagagacttaagtaggctggaacaacttaaaatagttcgacgtggctgtaagcga
aaattccacattgtcacagaggagtgggttcgtgcatgtctggaagaagggacactatgt
gcagagaaaccctatgaactttga
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