Phalacrocorax carbo (great cormorant): 104039330 Help Entry 104039330         CDS       T08596                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism pcao  Phalacrocorax carbo (great cormorant) Pathway pcao04010   MAPK signaling pathway pcao04120   Ubiquitin mediated proteolysis pcao04140   Autophagy - animal pcao04144   Endocytosis pcao04620   Toll-like receptor signaling pathway pcao04621   NOD-like receptor signaling pathway pcao04622   RIG-I-like receptor signaling pathway pcao05132   Salmonella infection pcao05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:pcao00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     104039330 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     104039330 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     104039330 (TRAF6)    04140 Autophagy - animal     104039330 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     104039330 (TRAF6)    04621 NOD-like receptor signaling pathway     104039330 (TRAF6)    04622 RIG-I-like receptor signaling pathway     104039330 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     104039330 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     104039330 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:pcao04131]     104039330 (TRAF6)    04121 Ubiquitin system [BR:pcao04121]     104039330 (TRAF6) Enzymes [BR:pcao01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      104039330 (TRAF6) Membrane trafficking [BR:pcao04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     104039330 (TRAF6) Ubiquitin system [BR:pcao04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     104039330 (TRAF6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 SlyX Med21 PspA_IM30 Sina_ZnF RING_XB3-XBAT31 TRAF3_RING zf-RING_11 CEP104_ZnF DUF4455 HAP1_N CENP-F_leu_zip U-box Spc29 ATG16 UPF0242 DUF1664 DUF16 HMMR_N PUMA_CC DUF2730 ADIP zf-U1 DM Motif Other DBs NCBI-GeneID:  104039330 NCBI-ProteinID:  XP_009502449 LinkDB All DBs Position Unknown AA seq 545 aa AA seqDB search MSLLYSDNSCGARDLESGCCAAMASACSAGVKEDSVSVSSGTGNPPSSFTEETQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD NFAKREILSLMVKCPNKGCSMKMELRHLEDHQLQCDFSTVECPQCQGAFQKNHLKEHMTQ ECPRRQVCCPYCATSMAYEDKELHDQTCPLANVFCEYCNTMLIREQMPNHYDNDCPTAPV PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTAANPVPFINGLPFDPAL FSQVSHATYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRNL EGKITEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGRPGYKLCLRLHIQL PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL AFQRPTIHRNPKGFGYVTFMHLQTLKQRTFVKDDTLLVRCEVLTRLDLNSLRREGFQARS ADGAM NT seq 1638 nt NT seq  +upstreamnt  +downstreamnt atgagcttgctatatagtgataacagttgtggagcccgagacttggagagtggctgctgt gcagccatggccagtgcctgcagcgctggagtgaaagaagacagcgtaagcgtcagcagt gggactggaaaccctccaagttctttcacagaggaaacacaaggttatgatgtggagttt gatccacccttggaaagtaaatacgaatgtccaatctgtttgatggctcttcgggaagca gtgcagacaccatgtggacaccgtttctgcaaaggctgcattgtcaaatcaataagagat gcaggtcacaaatgtccagtagacaatgaaattctgcttgaaaatcaactttttcctgac aactttgctaaacgggaaatcctttcattaatggtgaagtgtcccaacaagggctgcagt atgaagatggagttgaggcatttagaggaccaccagttgcagtgtgatttttccactgtg gaatgcccacagtgccaaggagccttccagaagaaccatctgaaagagcacatgacacag gagtgtccaaggcgtcaagtctgttgtccatactgtgccacatctatggcctatgaagat aaagagcttcatgaccaaacctgtccactcgccaatgtcttttgtgaatattgcaacaca atgctcatcagagagcagatgcctaaccattatgacaatgattgtcctactgccccagtg ccatgcttttacagtgcctttgggtgtcctgaaaagatgcaaaggaatgaactggcacga catatgcaggagttcactcaggttcacatgagaatgatggctcagagttttcaaaatatc agtgttactgctgcaaatcctgtacccttcatcaatggcctaccctttgaccctgccctc ttctcacaagtgtcacatgccacatatgattgcaatccagaagttgaaaacttcaaagaa actattcagcagttggaaggccgtctggtaagacaagatcaccaaatccgagaactcatt gctaaaatggagactcagaacactcacatggcagaactcaaacgtactatcagaaattta gagggaaagattactgaaatggaggcacagcaatgtaatggtatttatatctggaagatt gagaacttcagcggacttcagaaagcccaggaagaagagagacctgttgtgatgcacagt cctggcttctatactggaaggcctggctacaagctgtgtttgcggctgcatatccaatta ccaaatgctcagcgctgtgctaattttatatctctgtttgtccacactatgcaaggagaa tatgacagccatctgccttggcctttccaaggcactatacgactttctattttggatcag tcagaaggccctgaaaggcagaatcacgaagaagtaatggaagccaagccagagttatta gccttccagagaccaacaattcaccgcaatccaaaaggttttggttatgtgactttcatg cacctgcaaaccttgaaacaaagaacctttgtaaaggatgatacccttctggtgcgctgt gaagttctaacgcgtctagatttaaacagtctccgcagagaaggatttcaagctcgcagt gctgatggagctatgtag

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