Phalacrocorax carbo (great cormorant): 104039496
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Entry
104039496 CDS
T08596
Symbol
DDX58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao04622
RIG-I-like receptor signaling pathway
pcao04623
Cytosolic DNA-sensing pathway
pcao05164
Influenza A
pcao05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
104039496 (DDX58)
04623 Cytosolic DNA-sensing pathway
104039496 (DDX58)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104039496 (DDX58)
05168 Herpes simplex virus 1 infection
104039496 (DDX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pcao04054
]
104039496 (DDX58)
Enzymes [BR:
pcao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104039496 (DDX58)
Pattern recognition receptors [BR:
pcao04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
104039496 (DDX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C
RIG-I_C-RD
DEAD
ResIII
Helicase_C
SNF2-rel_dom
AAA_19
AAA_25
AAA_23
Motif
Other DBs
NCBI-GeneID:
104039496
NCBI-ProteinID:
XP_009511830
LinkDB
All DBs
Position
Unknown
AA seq
739 aa
AA seq
DB search
NGKDVDGEMTDAFENSFETMMTFSEEAECDNNLSENLCSASEGIYESSYVCEPKKARSYQ
IELAQPAINGKNTLICAPTGSGKTIVALMICEHHFENMPTGRKAKVVFLVTKVPVYEQQK
NLFQQHFERNGYSVQGLSGDTVANVSVEKVIQDSDIIVMTPQILVNSIKQRILSSLSIFT
LMIFDECHNTLGNHPYNVLMTTYLEEKFDSPANQLPQIVGLTASVGVGNATTIMETIEHI
CTICSYLDIQTISTVRENKQDLQRFGNKPETSVRQVKMRVQNHFADIISGLMSETEALMR
KIYSVDTMSQISKKDFGTQKYEHWIVFTQKKCKLLQLADKEKESSICRDLFICTEHLRKF
NDALIISEDARIEDAVAYLTEFFTNVKNGPYTEIEKRLTANFQEKEPEMTALSKDESNEN
PKLEELACILDEAYRYNPQTRTLLFAKTRALVAALKKWIEANPLLSHIKPEVLMGRGRRD
QKTGMTLPMQKGVLDAFKTNKESKLLIATSVADEGIDISECNLVVLYEYFGNVIKMIQVR
GRGRAKNSKCILVTSKAEVVEYEKHNRYKEEMMNEAIERLQNWDETTFARKICDLQMKEK
ALRDSRKKDTRPKLVEGKKNLLCGKCKAYACSTDDIRVIQESHHTVIGDAFKERYITKPH
QKPIQYDSFVKKNKMYCQNTNCQHDWGITVKYKMFDNLPVIKIKSFVLENVETGTQMEFQ
KWRDINFSLKNFDVEETPS
NT seq
2222 nt
NT seq
+upstream
nt +downstream
nt
ataatggcaaagatgttgatggtgaaatgacagatgcctttgagaacagctttgaaacca
tgatgacattttctgaagaagcagaatgtgataataatctcagtgaaaatctctgttcag
cttcagaagggatctatgagtcttcatacgtttgtgaaccaaagaaggctcggagctacc
agattgaacttgcacagcctgctatcaatgggaaaaacacattgatatgtgccccaacag
gatctggaaaaactattgtggcacttatgatttgtgaacatcatttcgaaaacatgccca
caggaagaaaggcaaaagttgtctttcttgtaactaaagtgccagtgtacgaacaacaaa
aaaatttattccagcagcattttgaaagaaatggatattctgttcaaggacttagtggtg
ataccgttgcaaatgtctctgtagaaaaggttatacaggacagtgacatcattgtaatga
caccccagattcttgtgaatagcatcaagcagcggatccttagctccctctccatcttca
ctctcatgatatttgatgagtgccacaataccttgggcaaccacccttacaatgtgttga
tgaccacatacctggaagaaaaatttgactcccctgcaaaccagctgcctcagattgtag
gtttaactgcatctgttggagtaggtaatgccacgaccatcatggaaacgatagagcaca
tctgcaccatttgctcctaccttgacatacagaccatatccactgtcagagagaacaaac
aggatctgcagagattcggaaacaagccagaaacatctgtcagacaggttaaaatgcgag
ttcaaaatcactttgcagacattatctcaggtctgatgtctgagacagaggcgttgatga
ggaagatttactcagtggatactatgtctcaaatcagcaagaaagattttggaacacaga
aatatgaacactggatagttttcactcagaagaaatgcaaactgttgcaactggcggata
aggagaaggaaagcagtatttgtagagaccttttcatttgcactgaacacctgcggaaat
tcaacgatgctctcattattagtgaagacgcccgcatcgaagatgctgtagcctacctaa
ctgaatttttcacaaatgtcaaaaatggaccgtatacagagatagagaagcgactgacag
ccaactttcaagagaaagaaccagaaatgactgccctttcaaaagatgaatcaaatgaga
atcccaagctggaagagcttgcgtgcatcctggatgaagcataccgctataacccacaga
ctcgcactcttctctttgctaagacaagagccttagtagctgctttgaagaagtggatag
aagcaaaccctctacttagccacataaagccagaagtgttgatgggtcgtggaagaagag
atcaaaaaacaggtatgaccctcccaatgcagaagggtgtgctggatgcattcaaaacca
acaaagagagcaaactgctaattgctacatctgttgctgatgaaggcattgatatttctg
agtgcaaccttgtcgtactctatgaatacttcggtaatgtcatcaaaatgatccaagtca
gaggtcgtggaagggcaaaaaacagcaagtgcatccttgtgacaagcaaagcagaagtgg
ttgagtatgagaaacacaaccgttataaggaagaaatgatgaatgaagctattgaaaggc
tacagaattgggatgaaacaacatttgcaagaaagatatgtgacctgcaaatgaaagaaa
aggcattacgagattccaggaagaaagatacaagacctaagttagtggaagggaaaaaaa
atcttctgtgtggaaaatgcaaagcatatgcctgcagtacagatgacatcagagttatac
aggaatctcatcacactgtcataggagatgcgttcaaggagcgttatataacaaagcctc
accagaaacccattcagtatgatagtttcgtgaaaaaaaacaagatgtattgccaaaata
ctaattgtcagcatgactggggaatcacagtgaagtacaagatgtttgataatctaccag
tgatcaaaatcaaaagctttgtactagagaatgttgaaactgggacacaaatggagtttc
agaaatggagagatattaatttttctttgaagaattttgatgttgaagaaacacccagct
ga
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