Phalacrocorax carbo (great cormorant): 104039577
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Entry
104039577 CDS
T08596
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104039577 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcao03400
]
104039577 (LIG4)
Enzymes [BR:
pcao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104039577 (LIG4)
DNA repair and recombination proteins [BR:
pcao03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104039577 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
104039577
NCBI-ProteinID:
XP_009512875
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPASQPPLKKTVASHVPFADLCSTLERIQMCKSRPEKTKYFKDFLDSWRKFHDALHQ
NEKDVTDSFYPAMRLIIPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
NGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKALVKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDALELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQLNNQVFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNIFQSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEILSKRYEILSSVFTPVTGRIHIVHKKSARTRKEVI
DALNEAIDKREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAVAETPPPNEKPAIFHSICRVGSGYTMKELYDLGMKLAKHWKPYHRKDPP
CNILCGTEKPEVYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAEGKLASKHLHIEEYDEPQEKKRKTVSKVRKVIGIAEQFKAPDLSNVSKV
SNVFEDVEFCVMTGTGEYSKSELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFRTKTLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANADVAQLK
EVFSRMKGNKVLPLDMIAELEERYAWNSCQLSIFRGDTIYVDCYAVVNEPRTKIRGTILS
IRALELRFYGAKVVSHLEEGISHVVIGEDHSRVQEIKTLRRTFGKKFKIVSELWVTESVE
EGVLRNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcacctgcttcgcagcctcctcttaaaaaaacagtggcctctcacgtccct
tttgcagatctgtgttcaactctggagcgaatacagatgtgtaaatctcgtccagagaaa
accaagtatttcaaggatttcctggactcctggagaaaattccacgatgctcttcatcaa
aacgagaaagatgtcacggattctttttatccagctatgcggctgattattccacagttg
gaaagagaaaggatggcgtatggaattaaagaaactatgcttgcaaagctgtatatcgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
aatggctcacgcggcgacgctggagattttgcaatgattgcgtactttgtcttaaaacct
aggagcccaaaacaaggcaggctgacaatagaacaagtcaatgaacacttagatgcaata
gctaataataatgctgctaaaaacaaggccctggtaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacagaaatggctcatccggatgattataaaggatctaaag
cttggtgttagccaacaaactatattttccatttttcatcctgatgctcttgaattacac
aatgttacaactgatctggaaaaagtttgcaggcagctgcatgacccctctgtctcgctt
agtgatgtctctatcatgttgttttctgccttcaaaccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaactgaataaccaggtattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagacggagatgtatataaatatttttcccgaaatgga
tttgactatactcagcagtttggtgcctccccccttgagggttcattaacgccatttatt
cataacatatttcagagcaacatacaaaattgcattctcgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcagaagggaaacaggtttgacataaaaagaatggtg
gaggactctgatctgcagacgtgcttctgtgtgtttgatgtattgatggttaacgatcag
aagttgggtcacgagatactaagcaaaagatacgaaatcttaagtagtgtatttaccccg
gtaacgggaaggatacacattgtacataaaaaaagtgccagaacgagaaaagaagtaatt
gatgctttaaatgaagccatagataaaagagaggaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtc
aatgggctgatggatgaactagaccttttaattgttggtggttactggggaaagggcttg
cgtggtggaatgatgtctcattttctgtgcgctgttgcagagacgccccctccgaatgaa
aaacctgccattttccactctatttgtcgtgttggctctggctatactatgaaggaattg
tatgatttaggtatgaaactggcgaaacactggaagccttaccataggaaggaccctccc
tgtaacattttgtgtggaactgaaaaacctgaagtgtacattgaaccttgcaactctgtt
atagttcagatcaaggcagccgagattgttaacagtgatatgtacaaaactgactgtact
ttgcgattcccccgaattgagaagatacgagaggacaaagaatggtacgagtgcatgact
tcagacatgttagaagatctcagaagcaaagcggaagggaagctggcatctaaacacctt
catatagaagagtatgatgagccacaagagaaaaaaaggaaaaccgtatcaaaggtgagg
aaggtaattggaatagctgagcagtttaaagctcccgatctttctaatgtaagcaaggtt
tcaaatgtgtttgaagacgttgagttttgtgttatgacgggaacgggagaatactcaaag
tctgaactggagagcagaatagctgaatgtgggggcagcgtggtacagaacccagggccg
gagacttactgcgtcatcgtgggagctgagaatgtcagggtgaaaaacatcattgcttcc
aacaaatacgatgtggtgagggcagagtggctccttcagtgttttcgaaccaaaacgctg
gtgccctggcagccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgggagtatgattgttatggagacagctacacagcaaacgcagatgttgcacaactcaag
gaagtgttctcaagaatgaagggcaataaggtgttgcctttggacatgattgcagagtta
gaagaacgttacgcatggaacagctgccagctcagtattttcagaggagacactatttat
gtggactgttacgctgttgttaatgagcccagaaccaaaatccgtggaacaatactatcg
atcagagctttggagctccgtttttatggcgcaaaagtagtctctcaccttgaagagggc
atctcccatgttgttataggagaagaccattcccgggtacaagagataaaaacactccgg
agaacgtttgggaaaaaatttaaaatcgtatctgagctgtgggtaacagagtcagtggag
gaaggagtcctaaggaatgaaaatcagtacttaatttaa
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