Phalacrocorax carbo (great cormorant): 104044861
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Entry
104044861 CDS
T08596
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pcao
Phalacrocorax carbo (great cormorant)
Pathway
pcao03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pcao00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
104044861 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcao03000
]
104044861 (KDM2B)
04121 Ubiquitin system [BR:
pcao04121
]
104044861 (KDM2B)
03036 Chromosome and associated proteins [BR:
pcao03036
]
104044861 (KDM2B)
Enzymes [BR:
pcao01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
104044861 (KDM2B)
Transcription factors [BR:
pcao03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
104044861 (KDM2B)
Ubiquitin system [BR:
pcao04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
104044861 (KDM2B)
Chromosome and associated proteins [BR:
pcao03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
104044861 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
104044861 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
LRR_4
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
104044861
NCBI-ProteinID:
XP_009503050
LinkDB
All DBs
Position
Unknown
AA seq
710 aa
AA seq
DB search
NRAVGRPKGKLGTASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGG
PGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEESKFNLMLMECSICNEIIHPG
CLKVKESDGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKINRDNK
EVTDAAKRKGDCEETPRRKSEEHSKKTQVDSILRRKSDEVHLWRKRKFEKPQEPTMRKRL
KLGKEEKLVRKKRRSWKAPDDRSAMIKPLRRLKQEPEDDLPEAPPRSKDSDQSRSSSPTA
GPSTEGAEPRDKKKFKMRRKRRLPNKELSKELSKELNQEIQKTENSLANENHQPIKSEPE
SENEEPKRALNNSERLHRFSKGLNGTPRELRHQLIPSLRSTPRGITRPPPSLSPPKCIQM
ERHVIRPPPISPPPDSLPLDDGAAHVMQREVWMAVFSYLSHRDLCICMRVCKTWNRWCCD
KRLWTKIDLNHCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLSWLINRLPGLRDLLLSG
CSKKRHFASCPLLRTLDVQWAEGLKDAQMRDLLSPPTDNRPGQIDNRSKLRNIVELRLAG
LDITDASLRLIIRHMPLLSKLNLSYCNHVTDQSINLLTAVGTTTRDSLTEINLSDCNKVT
DQCLSYFKRCGNICQIDLRYCKQVTKEGCEQFIAXXXXXXGKWKKNFCKN
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
aacagggcagtcggacggcccaaggggaaactggggactgcttctgcggtgaagcttgca
gctaatcggacaaccgctggagcacgtcggaggaggacgcgatgccgcaagtgcgaggcg
tgtctgcggacagagtgcggcgagtgtcacttctgcaaagacatgaagaaatttggggga
cctggcaggatgaaacagtcctgcattatgaggcagtgtatcgcaccggtgttgcctcat
actgctgtatgtctggtgtgtggagaagctgggaaagaggacactgtggaagaggaggag
agcaaatttaatctcatgctaatggagtgctccatttgtaatgaaatcatacacccagga
tgccttaaggtgaaggaatcggatggtgtggttaacgatgagctgccgaactgctgggag
tgtccaaagtgcaaccatgcagggaaaactggaaaacaaaagcgcggaccaggattcaaa
tacgcatcaaatctcccaggctcattgctgaaggaacagaaaattaacagagacaataag
gaagtaacagatgctgcaaaacggaaaggggattgtgaagaaactcccaggcggaaatca
gaggaacattccaaaaagactcaagttgactcaatactgaggagaaagtcagacgaagtg
catctgtggaggaaaaggaaatttgagaaaccccaggaacccactatgagaaagcggcta
aaacttggaaaagaagagaaacttgtcaggaagaagcggcgatcgtggaaggctccagat
gaccgaagtgccatgatcaaacccctgcggcgtctcaagcaggagccagaggatgacctg
cctgaagcacctcccaggtccaaggatagtgaccagtcacggtccagctcacccactgca
ggtcccagcacggagggcgccgagcccagggacaagaagaagtttaagatgcgtcggaaa
aggcggcttcccaataaggaactgagcaaggagctcagcaaggagctcaaccaggagatc
caaaaaaccgagaacagccttgccaatgagaatcaccaacccatcaaatctgaacctgag
agtgagaatgaggaacctaagcgtgctttgaacaacagcgagagactccataggttcagc
aaagggttaaacgggactccccgggaactgaggcaccagctcatccccagtctgcgaagc
acacctcggggaataacccggccaccgccttcgctctctcctcccaaatgcattcagatg
gaacggcatgttattcggccacctcccatcagcccccctccggactcgctccccctggat
gatggggcagcccatgtgatgcagagggaagtttggatggctgtctttagctacctcagt
catagagacttgtgcatctgtatgagagtttgcaagacctggaacagatggtgctgtgac
aaaagattatggaccaaaatagatttaaaccattgtaaatccatcactccacttatgcta
agtggcattattaggagacagcctgtaacccttgatcttagctggacaaatatatctaaa
aagcagctgagttggcttatcaacagactgccaggtcttcgagacctgctgttatcaggg
tgctcaaaaaaacggcactttgccagttgtcctttactccgaactctggatgtgcagtgg
gcagaaggcctgaaagacgcacaaatgagagacctcttgtcgccacccaccgataaccgg
ccaggtcagattgacaaccggagtaaactacggaacatcgttgagctgcgtttggctggc
ctggatattacagatgcttctttgcggctgatcataaggcatatgcctctgctctccaaa
ctcaatcttagttactgtaatcacgtgacagatcagtctattaacctgctgaccgcggtc
ggaaccaccacgcgggattcattaacagaaattaatttatcagactgcaataaggttact
gaccagtgcctgtcttacttcaaacgttgtggaaatatctgccagatcgacctgaggtac
tgcaagcaagtgacaaaagaaggctgcgagcagttcatagcggannnnnnnnnnnnnntg
ggcaagtggaagaaaaacttctgcaaaaactga
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integrated database retrieval system
